chr9 : 113,411,295 113,411,475
180 bp 65 TFs 2 linked genes
This 180 bp open chromatin element is linked to C9orf43 and POLE3 and is bound by 65 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
C9orf43 554 bp At TSS Proximity
POLE3 913 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:113,406,295 – 113,416,475
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 74 bp overlap
AR 1 dataset
ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 104 bp overlap
BRD2 5 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 58 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 69 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 50 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 50 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 60 bp overlap
BRD4 17 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 85 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 100 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 106 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 75 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 75 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 63 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 70 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 71 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 56 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 51 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 50 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 88 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 60 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 75 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 68 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 58 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 180 bp overlap
BRD9 1 dataset
ChIP K562 ENCFF480JXZ 104 bp overlap
CREM 1 dataset
ChIP GM12878 ENCFF391UGE 180 bp overlap
CTCF 3 datasets
ChIP brain ENCFF163BBN 148 bp overlap
ChIP thyroid gland ENCFF631QRY 145 bp overlap
ChIP transverse colon ENCFF077CMZ 88 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCFF692OYJ 180 bp overlap
E2F4 1 dataset
Motif DE_72h DE_72h-E2F4_MA0470.3 13 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCFF485YIB 60 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF872AQB 98 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 104 bp overlap
ChIP K562 ENCFF541ZGX 94 bp overlap
KDM5B 1 dataset
ChIP K562 ENCFF049WWX 125 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 180 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 71 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 58 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 166 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 118 bp overlap
MXI1 1 dataset
ChIP K562 ENCFF336XYS 158 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 85 bp overlap
NELFA 1 dataset
ChIP K-562_NHS GSE112379.NELFA.K-562_NHS 91 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 104 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 71 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 76 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 62 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 66 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 62 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 88 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 108 bp overlap
POLR2A 8 datasets
ChIP A549 ENCFF748RAW 180 bp overlap
ChIP GM15510 ENCFF880HVJ 180 bp overlap
ChIP GM18505 ENCFF311CYB 180 bp overlap
ChIP GM18951 ENCFF079KKO 175 bp overlap
ChIP MCF-7 ENCFF411WCU 180 bp overlap
ChIP MCF-7 ENCFF411WCU 58 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 119 bp overlap
ChIP thyroid gland ENCFF979LRR 180 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 88 bp overlap
ChIP K562 ENCFF967GRF 89 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCFF171OVM 180 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 50 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 153 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 165 bp overlap
ChIP K562 ENCFF506JCB 174 bp overlap
SMARCC2 1 dataset
ChIP K562 ENCFF368GSR 78 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 180 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 83 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 103 bp overlap
SRF 1 dataset
ChIP K562 ENCFF766EOO 180 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 61 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF254RJL 180 bp overlap
YY1 8 datasets
ChIP GM12878 ENCFF908JTL 180 bp overlap
ChIP GM12891 ENCFF460SIS 56 bp overlap
ChIP K562 ENCFF660QRE 180 bp overlap
ChIP SK-N-SH ENCFF087JSD 180 bp overlap
ChIP SK-N-SH ENCFF087JSD 84 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 57 bp overlap
ChIP liver ENCFF515BWJ 156 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 102 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 129 bp overlap
ZHX2 1 dataset
ChIP MCF-7 ENCFF733XRY 159 bp overlap
ZKSCAN8 2 datasets
ChIP K562 ENCFF387ETI 180 bp overlap
ChIP K562 ENCFF866TZL 78 bp overlap
ZNF135 3 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 130 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 180 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 180 bp overlap
ChIP HepG2 ENCFF256AZN 180 bp overlap
ZNF384 6 datasets
ChIP HEK293T ENCFF019DZX 156 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 75 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 73 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 51 bp overlap
ChIP K562 ENCFF365NXQ 180 bp overlap
ChIP K562 ENCFF365NXQ 94 bp overlap
ZNF417 1 dataset
Motif DE_72h DE_72h-ZNF417_MA1727.2 7 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 180 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 127 bp overlap