chr9 : 97,857,172 – 97,857,861
689 bp 66 TFs 1 linked gene
This 689 bp open chromatin element is linked to FOXE1 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FOXE1 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:97,852,172 – 97,862,861
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 243 bp overlap
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 257 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 257 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 270 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 366 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 98 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 689 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 451 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 398 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 245 bp overlap
BRD4 4 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 107 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 171 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 360 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 214 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 357 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 213 bp overlap
CBX7 2 datasets
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 190 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 339 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 559 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 187 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 571 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 336 bp overlap
CTCF 1 dataset
ChIP erythroid GSE67783.CTCF.erythroid 234 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 140 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 132 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 220 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 81 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 90 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 109 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 92 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 54 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 63 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 142 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 52 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 94 bp overlap
ESR1_Y537N 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 54 bp overlap
EZH2 29 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 689 bp overlap
ChIP GM23248 ENCFF506FWX 445 bp overlap
ChIP GM23338 ENCFF613YON 689 bp overlap
ChIP GM23338 ENCFF886DXX 77 bp overlap
ChIP GM23338 ENCFF886DXX 438 bp overlap
ChIP H1 ENCFF232NZA 689 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 407 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 487 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 287 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 102 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 689 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 222 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 338 bp overlap
ChIP SK-N-MC ENCFF674XUJ 501 bp overlap
ChIP T98G GSE112240.EZH2.T98G 258 bp overlap
ChIP astrocyte ENCFF365JTP 523 bp overlap
ChIP astrocyte ENCFF365JTP 523 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 494 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 689 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 292 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 247 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 247 bp overlap
ChIP fibroblast of lung ENCFF479BAW 415 bp overlap
ChIP hepatocyte ENCFF552DZB 689 bp overlap
ChIP myotube ENCFF857GWB 347 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 301 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 637 bp overlap
ChIP neural progenitor cell ENCFF018MKA 689 bp overlap
ChIP neural progenitor cell ENCFF472NFV 689 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 306 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 274 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 396 bp overlap
ChIP DE DE-FOXA2-2 419 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 379 bp overlap
ChIP DE DE-GATA4-2 469 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 362 bp overlap
ChIP DE DE-GATA6-2 589 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 417 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 283 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 478 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 516 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 183 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 190 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 217 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 128 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 223 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 89 bp overlap
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 343 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 184 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 282 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 245 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 238 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 148 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 98 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 246 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 217 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 368 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 425 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 81 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 178 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 238 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 134 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 220 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 325 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 96 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 79 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 168 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 689 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 81 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 180 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 245 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 258 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 147 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 122 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 308 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 245 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 528 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 58 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 412 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 475 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 191 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 231 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 235 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 181 bp overlap
SUZ12 15 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 298 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 136 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 689 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 179 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 230 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 148 bp overlap
ChIP K562 ENCFF397TBJ 445 bp overlap
ChIP K562 ENCFF397TBJ 323 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 267 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 347 bp overlap
ChIP NT2/D1 ENCFF574SXS 170 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SUZ12.SYO-1_shRING1A-B 104 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 689 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 368 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 142 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 194 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 283 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 204 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 226 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 203 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 260 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 130 bp overlap
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