chr9 : 86,491,878 86,492,282
404 bp 73 TFs 0 linked genes
This 404 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:86,486,878 – 86,497,282
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 28 datasets
ChIP LNCaP GSE110655.AR.LNCaP 236 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 198 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 58 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 185 bp overlap
ChIP VCaP GSE148358.AR.VCaP 140 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 247 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 136 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 182 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 149 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 202 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 345 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 186 bp overlap
ChIP prostate GSE56288.AR.prostate 283 bp overlap
ChIP prostate GSE65478.AR.prostate 218 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 179 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 188 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 175 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 379 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 244 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 337 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 355 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 272 bp overlap
ChIP prostate_P13_T GSE130408.AR.prostate_P13_T 173 bp overlap
ChIP prostate_P1_T GSE130408.AR.prostate_P1_T 196 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 319 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 255 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 189 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 247 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 404 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 377 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 176 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 207 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 154 bp overlap
BRD4 1 dataset
ChIP RH4 GSE83726.BRD4.RH4 307 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 239 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 261 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 236 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 150 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 166 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 174 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 244 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 261 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 107 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 361 bp overlap
FOS 1 dataset
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 60 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 281 bp overlap
FOXA1 24 datasets
ChIP LNCaP GSE56288.FOXA1.LNCaP 273 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 163 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 189 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 221 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 134 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 145 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 115 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 208 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 70 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 250 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 243 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 288 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 232 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 262 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 345 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 344 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 194 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 195 bp overlap
ChIP prostate_P19 GSE130408.FOXA1.prostate_P19 169 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 178 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 315 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 259 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 285 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 157 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 404 bp overlap
ChIP DE DE-FOXA2-2 404 bp overlap
GATA2 3 datasets
ChIP ESF GSE108408.GATA2.ESF 404 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 267 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 303 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 375 bp overlap
ChIP DE DE-GATA4-2 404 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 330 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 230 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 331 bp overlap
ChIP DE DE-GATA6-2 404 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 228 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 358 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 404 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCFF446EIF 384 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 208 bp overlap
HOXB13 32 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 216 bp overlap
ChIP LNCaP_Veh GSE148928.HOXB13.LNCaP_Veh 181 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 84 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 191 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 123 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 351 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 396 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 320 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 334 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 299 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 331 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 323 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 382 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 329 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 306 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 181 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 256 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 305 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 310 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 339 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 355 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 270 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 397 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 356 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 315 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 330 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 240 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 387 bp overlap
ChIP prostate_P5 GSE130408.HOXB13.prostate_P5 154 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 333 bp overlap
ChIP prostate_P7 GSE130408.HOXB13.prostate_P7 183 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 332 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 320 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 93 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 131 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 71 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 253 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 214 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 231 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 404 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 152 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 262 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 163 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 367 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 114 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 391 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 270 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 404 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 222 bp overlap
PGR 2 datasets
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 282 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 150 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 289 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 127 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 169 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 88 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 202 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 404 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 160 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 63 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 165 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 100 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 245 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 285 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 266 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 292 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 404 bp overlap
SMARCA4 2 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 380 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 345 bp overlap
SMARCC1 2 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 224 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 219 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 194 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 290 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 321 bp overlap
TEAD4 2 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 343 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 216 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 333 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 200 bp overlap
WT1 3 datasets
ChIP HEK293 ENCFF906HIR 233 bp overlap
ChIP HEK293 ENCFF906HIR 143 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 404 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 320 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 404 bp overlap
ZBTB16 1 dataset
ChIP hESC GSE75115.ZBTB16.hESC 182 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 259 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 249 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 315 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 396 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 257 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 404 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 242 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 104 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 104 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 362 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 267 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 396 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 282 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 188 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 152 bp overlap