chr9 : 78,397,051 78,397,835
784 bp 79 TFs 2 linked genes
This 784 bp open chromatin element is linked to PSAT1 and CEP78 and is bound by 79 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PSAT1 100.3 kb Distal Multiome
CEP78 161.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:78,392,051 – 78,402,835
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP NGP GSE134626.ARID1A.NGP 199 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 498 bp overlap
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 155 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 170 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 408 bp overlap
BRD4 11 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 309 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 595 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 682 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 183 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 60 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 509 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 235 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 396 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 283 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 754 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 296 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 248 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 249 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 322 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 135 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 3 datasets
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 528 bp overlap
ChIP DE DE-FOXA2-2 400 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 193 bp overlap
FOXC1 3 datasets
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 3 datasets
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD2 5 datasets
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 5 datasets
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXE1 5 datasets
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXN3 2 datasets
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
FOXP2 5 datasets
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 277 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 295 bp overlap
ChIP DE DE-GATA4-2 306 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 431 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 449 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 307 bp overlap
HMBOX1 3 datasets
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 189 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 330 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 270 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 275 bp overlap
KLF14 2 datasets
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
MAFF 1 dataset
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 340 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 241 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 164 bp overlap
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 267 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 403 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 140 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 226 bp overlap
MYCN 4 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 321 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 292 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 282 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 201 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 277 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 167 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 585 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 135 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 241 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
NFKB1 3 datasets
Motif DE_36h DE_36h-NFKB1_MA0105.4 13 bp overlap
Motif DE_48h DE_48h-NFKB1_MA0105.4 13 bp overlap
Motif DE_60h DE_60h-NFKB1_MA0105.4 13 bp overlap
NFKB2 3 datasets
Motif DE_36h DE_36h-NFKB2_MA0778.2 11 bp overlap
Motif DE_48h DE_48h-NFKB2_MA0778.2 11 bp overlap
Motif DE_60h DE_60h-NFKB2_MA0778.2 11 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 336 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 296 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 280 bp overlap
ChIP islet ERP001456.PDX1.islet 203 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 368 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 360 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 323 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 345 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 231 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 450 bp overlap
PRDM1 2 datasets
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Prdm5 3 datasets
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 284 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 316 bp overlap
REL 3 datasets
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
Motif DE_48h DE_48h-REL_MA0101.1 10 bp overlap
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
RELA 3 datasets
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
RELB 3 datasets
Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap
Motif DE_48h DE_48h-RELB_MA1117.2 7 bp overlap
Motif DE_60h DE_60h-RELB_MA1117.2 7 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 269 bp overlap
ChIP neural ENCSR000BTV.REST.neural 129 bp overlap
SMARCA4 6 datasets
ChIP NGP GSE134626.SMARCA4.NGP 774 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 360 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 298 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 591 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 189 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 238 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 446 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 425 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 193 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 315 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 615 bp overlap
SOX2 2 datasets
ChIP HCC2814 GSE137459.SOX2.HCC2814 270 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 228 bp overlap
SP4 2 datasets
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 212 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 265 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 264 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 303 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 303 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 357 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 205 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 205 bp overlap
ZBTB6 2 datasets
Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_48h DE_48h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 179 bp overlap
ZFP14 2 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 399 bp overlap
ZNF24 5 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF354A 3 datasets
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 3 datasets
Motif DE_36h DE_36h-ZNF384_MA1125.2 8 bp overlap
Motif DE_48h DE_48h-ZNF384_MA1125.2 8 bp overlap
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
ZNF460 2 datasets
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF549 1 dataset
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
ZNF558 3 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF768 3 datasets
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap