chr1 : 118,250,117 – 118,250,585
468 bp 125 TFs 0 linked genes
This 468 bp open chromatin element has no linked target genes and is bound by 125 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:118,245,117 – 118,255,585
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
125 transcription factors
Source
Cell type
ALX3 2 datasets
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
Motif DE_36h DE_36h-ALX3_MA0634.2 6 bp overlap
ARGFX 2 datasets
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
Motif DE_36h DE_36h-ARGFX_MA1463.2 8 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 112 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 239 bp overlap
BRD4 1 dataset
ChIP RH4 GSE83726.BRD4.RH4 274 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 358 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 218 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 258 bp overlap
DRGX 2 datasets
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
Motif DE_36h DE_36h-DRGX_MA1481.2 6 bp overlap
EMX1 2 datasets
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
Motif DE_36h DE_36h-EMX1_MA0612.3 6 bp overlap
EMX2 2 datasets
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
Motif DE_36h DE_36h-EMX2_MA0886.2 6 bp overlap
EN1 2 datasets
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
Motif DE_36h DE_36h-EN1_MA0027.3 6 bp overlap
EN2 2 datasets
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
ERF::FOXI1 1 dataset
Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap
ESX1 2 datasets
Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap
Motif DE_36h DE_36h-ESX1_MA0644.3 7 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 186 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 190 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::DRGX 2 datasets
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap
EVX1 2 datasets
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
Motif DE_36h DE_36h-EVX1_MA0887.2 6 bp overlap
EVX2 2 datasets
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
Motif DE_36h DE_36h-EVX2_MA0888.2 6 bp overlap
FLI1 6 datasets
ChIP A-673 GSE99959.FLI1.A-673 246 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 333 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 295 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 312 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 334 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 293 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXC1 2 datasets
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXC2 2 datasets
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXD2 2 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXD3 2 datasets
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 146 bp overlap
GATA4 2 datasets
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 403 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 413 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 410 bp overlap
GBX1 2 datasets
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
GSX1 2 datasets
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
Motif DE_36h DE_36h-GSX1_MA0892.2 6 bp overlap
GSX2 2 datasets
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
Motif DE_36h DE_36h-GSX2_MA0893.3 7 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 183 bp overlap
HNF1A 2 datasets
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
Motif DE_36h DE_36h-HNF1B_MA0153.2 13 bp overlap
HOXA1 2 datasets
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
Motif DE_36h DE_36h-HOXA1_MA1495.2 6 bp overlap
HOXA2 2 datasets
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
Motif DE_36h DE_36h-HOXA2_MA0900.3 6 bp overlap
HOXA3 2 datasets
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
HOXB1 2 datasets
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
Motif DE_36h DE_36h-HOXB1_MA2093.1 7 bp overlap
HOXB2 2 datasets
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
Motif DE_36h DE_36h-HOXB2_MA0902.3 6 bp overlap
HOXB3 2 datasets
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
Motif DE_36h DE_36h-HOXB3_MA0903.2 6 bp overlap
HOXB5 2 datasets
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
Motif DE_36h DE_36h-HOXB5_MA0904.3 6 bp overlap
HOXC8 2 datasets
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
Motif DE_36h DE_36h-HOXC8_MA1505.2 6 bp overlap
HOXD3 2 datasets
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
Hmx2 2 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
IKZF1 1 dataset
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
ISX 2 datasets
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
Motif DE_36h DE_36h-ISX_MA0654.2 6 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 290 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 270 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 347 bp overlap
LBX1 2 datasets
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
LHX5 2 datasets
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
Motif DE_36h DE_36h-LHX5_MA1519.2 7 bp overlap
LHX6 2 datasets
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
LHX9 2 datasets
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
LMX1A 2 datasets
Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap
Motif DE_36h DE_36h-LMX1A_MA0702.3 7 bp overlap
LMX1B 2 datasets
Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap
Motif DE_36h DE_36h-LMX1B_MA0703.3 8 bp overlap
Lhx1 2 datasets
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap
Lhx4 2 datasets
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Motif DE_36h DE_36h-Lhx4_MA0704.2 6 bp overlap
Lhx8 2 datasets
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
Motif DE_36h DE_36h-Lhx8_MA0705.2 6 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MEOX1 2 datasets
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
Motif DE_36h DE_36h-MEOX1_MA0661.2 7 bp overlap
MEOX2 2 datasets
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
Motif DE_36h DE_36h-MEOX2_MA0706.2 7 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
MIXL1 2 datasets
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
Motif DE_36h DE_36h-MIXL1_MA0662.2 6 bp overlap
MNX1 2 datasets
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
Motif DE_36h DE_36h-MNX1_MA0707.3 6 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 82 bp overlap
MYOD1 2 datasets
ChIP RD GSE137168.MYOD1.RD 181 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 201 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 206 bp overlap
Msgn1 1 dataset
Motif DE_36h DE_36h-Msgn1_MA1524.3 10 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 468 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 316 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 358 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 251 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 308 bp overlap
NFIA 1 dataset
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
NIPBL 3 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 246 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 374 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 191 bp overlap
NKX6-2 2 datasets
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
Motif DE_36h DE_36h-NKX6-2_MA0675.2 6 bp overlap
NOTO 2 datasets
Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap
Motif DE_36h DE_36h-NOTO_MA0710.2 7 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR5A1 2 datasets
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_36h DE_36h-Nr5A2_MA0505.3 9 bp overlap
PDX1 2 datasets
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
Motif DE_36h DE_36h-PDX1_MA0132.3 6 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 396 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
Motif DE_36h DE_36h-POU6F1_MA0628.2 6 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
PRRX1 2 datasets
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
Motif DE_36h DE_36h-PRRX1_MA0716.2 6 bp overlap
PRRX2 2 datasets
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
RAX2 2 datasets
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
Motif DE_36h DE_36h-RAX2_MA0717.2 6 bp overlap
REST 1 dataset
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 184 bp overlap
RREB1 2 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
RXRA 1 dataset
ChIP GM12878 ENCSR000BJD.RXRA.GM12878 123 bp overlap
SHOX 2 datasets
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
Motif DE_36h DE_36h-SHOX_MA0630.2 6 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap
SIX2 3 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 193 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 346 bp overlap
SIX5 1 dataset
ChIP H1 ENCFF942SOJ 237 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 110 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 182 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 292 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 319 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 313 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 220 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Shox2 2 datasets
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
Motif DE_36h DE_36h-Shox2_MA0720.2 6 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_36h DE_36h-Six4_MA2001.2 7 bp overlap
Spz1 2 datasets
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Motif DE_36h DE_36h-Spz1_MA0111.1 11 bp overlap
TLX2 2 datasets
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
Motif DE_36h DE_36h-TLX2_MA1577.2 6 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
UNCX 2 datasets
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
Motif DE_36h DE_36h-UNCX_MA0721.2 6 bp overlap
VAX1 2 datasets
Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap
Motif DE_36h DE_36h-VAX1_MA0722.2 7 bp overlap
VAX2 2 datasets
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
Motif DE_36h DE_36h-VAX2_MA0723.3 6 bp overlap
VSX1 2 datasets
Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap
Motif DE_36h DE_36h-VSX1_MA0725.2 7 bp overlap
VSX2 2 datasets
Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap
Motif DE_36h DE_36h-VSX2_MA0726.2 7 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZBTB26 2 datasets
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 460 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 231 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF766 2 datasets
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
mix-a 2 datasets
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap
Motif DE_36h DE_36h-mix-a_MA0621.2 7 bp overlap
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