chr1 : 115,647,538 – 115,647,746
208 bp 66 TFs 1 linked gene
This 208 bp open chromatin element is linked to VANGL1 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VANGL1 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,642,538 – 115,652,746
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 208 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 182 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 122 bp overlap
ATF4 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 105 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 69 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 208 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 171 bp overlap
ChIP K562 ENCFF343XWA 102 bp overlap
BRD4 2 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 208 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 208 bp overlap
CDK7 3 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 184 bp overlap
ChIP Jurkat GSE50622.CDK7.Jurkat 208 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 208 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 208 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 208 bp overlap
CTCF 20 datasets
ChIP GM06990 ENCFF471OQT 208 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 179 bp overlap
ChIP GM12864 ENCFF357DQE 208 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 158 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 161 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 190 bp overlap
ChIP GM12875 ENCFF081UCQ 208 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 115 bp overlap
ChIP GM12878 ENCFF511URZ 196 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 208 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 208 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 208 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 167 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 137 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 162 bp overlap
ChIP Loucy ENCFF359TVQ 208 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 208 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 177 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF470UPO 165 bp overlap
EGR1 5 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 157 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 141 bp overlap
ChIP K562 ENCFF006PJY 181 bp overlap
ChIP K562 ENCFF113OPQ 208 bp overlap
ChIP K562 ENCFF895KGN 208 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 168 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 163 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 144 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 208 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 91 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 208 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 208 bp overlap
EZH2 1 dataset
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 208 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 208 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 185 bp overlap
ChIP DE DE-FOXA2-2 93 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 51 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 57 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 55 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 102 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 145 bp overlap
GATA2 4 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 208 bp overlap
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 53 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 118 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 208 bp overlap
GATA3 5 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 208 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 208 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 208 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 208 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 208 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 114 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 180 bp overlap
ChIP DE DE-GATA4-2 142 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 96 bp overlap
ChIP foregut GSE117136.GATA4.foregut 192 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 186 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 158 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 72 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 208 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 102 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 61 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 118 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 208 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 165 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 92 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 177 bp overlap
ChIP K562 ENCFF195BET 180 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 203 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 208 bp overlap
ChIP K562 ENCFF771OHZ 88 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 131 bp overlap
KDM1A 9 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 126 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 111 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 90 bp overlap
ChIP K562 ENCFF128TYE 208 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 140 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 76 bp overlap
ChIP SET-2_GSK GSE121424.KDM1A.SET-2_GSK 169 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 117 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 113 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 208 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 208 bp overlap
MYB 4 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 208 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 208 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 208 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 208 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 102 bp overlap
NFXL1 1 dataset
ChIP K562 ENCFF619QDE 188 bp overlap
NOTCH1 2 datasets
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 140 bp overlap
ChIP HPBALL GSE39263.NOTCH1.HPBALL 208 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 88 bp overlap
PAX8 1 dataset
ChIP MCF-7 ENCFF361SPS 208 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 208 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 208 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 179 bp overlap
RAD21 2 datasets
ChIP HeLa-S3 ENCFF775CHI 208 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 117 bp overlap
RBPJ 1 dataset
ChIP CUTLL1 GSE29600.RBPJ.CUTLL1 130 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 208 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 208 bp overlap
ChIP K562 ENCFF421AVO 169 bp overlap
ChIP K562 ENCFF809XVG 208 bp overlap
ChIP MCF-7 ENCFF782EZS 208 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 208 bp overlap
RUNX1 3 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 208 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 208 bp overlap
ChIP K-562 ENCSR588AKU.RUNX1.K-562 64 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 208 bp overlap
SMARCA4 8 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 208 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 208 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 208 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 208 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 208 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 208 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 58 bp overlap
ChIP K562 ENCFF506JCB 136 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 208 bp overlap
ChIP K562 ENCFF936KHY 208 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 166 bp overlap
SPI1 8 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 201 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 208 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 208 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 187 bp overlap
ChIP GM12891 ENCFF563IUT 156 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 130 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 149 bp overlap
ChIP K562 ENCFF410ORC 164 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 208 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 112 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 62 bp overlap
TCF12 1 dataset
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 163 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 162 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 208 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 196 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 114 bp overlap
ChIP K562 ENCFF255RZG 167 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 208 bp overlap
ZMYM3 4 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 171 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 155 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 208 bp overlap
ChIP K562 ENCFF361LXT 158 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 110 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 208 bp overlap
Huangfu Lab · Publications · Resources · Contact