chr6 : 50,591,180 – 50,591,782
602 bp 85 TFs 0 linked genes
This 602 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:50,586,180 – 50,596,782
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 334 bp overlap
ASCL1 4 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BARX1 4 datasets
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 418 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 358 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 240 bp overlap
BSX 4 datasets
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 217 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 294 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
DLX1 4 datasets
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 4 datasets
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
Dlx3 4 datasets
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 4 datasets
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 275 bp overlap
EP300 5 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 324 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 412 bp overlap
ChIP neural cell ENCFF442QNK 452 bp overlap
ChIP neural cell ENCFF442QNK 130 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 1 dataset
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 137 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 438 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 391 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 258 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 327 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 192 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 413 bp overlap
ChIP SK-N-SH ENCFF764OZD 405 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 325 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 245 bp overlap
GATA3 7 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 235 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 383 bp overlap
ChIP SH-SY5Y ENCFF475HYF 247 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 237 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 163 bp overlap
ChIP SK-N-SH ENCFF040SSB 219 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 7 datasets
ChIP G296S GSE85628.GATA4.G296S 328 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 328 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 192 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 343 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 344 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 355 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 344 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 405 bp overlap
GBX2 4 datasets
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 381 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 367 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 353 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 243 bp overlap
HESX1 4 datasets
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HEY2 1 dataset
ChIP hiPSC GSE81585.HEY2.hiPSC 224 bp overlap
HOXA7 4 datasets
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 362 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 351 bp overlap
LBX2 4 datasets
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 4 datasets
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 339 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 267 bp overlap
MED1 3 datasets
ChIP G296S GSE85628.MED1.G296S 262 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 262 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MEIS1 5 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 5 datasets
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MSX1 4 datasets
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 4 datasets
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 292 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 279 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 339 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 92 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 274 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap
Msx3 4 datasets
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 420 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 455 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 420 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nobox 4 datasets
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 242 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 266 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 263 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 276 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 396 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 319 bp overlap
ChIP neural cell ENCFF604SPB 328 bp overlap
Pax7 4 datasets
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
RAD21 1 dataset
ChIP neural cell ENCFF564MOT 505 bp overlap
RARA 2 datasets
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 232 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 208 bp overlap
RAX 4 datasets
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 243 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 340 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 425 bp overlap
ChIP neural cell ENCFF882LXX 466 bp overlap
ChIP neural cell ENCFF882LXX 438 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 466 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 271 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 329 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 248 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 319 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 203 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 357 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 326 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 453 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 453 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 439 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 499 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 420 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 404 bp overlap
TCF4 2 datasets
ChIP SK-N-SH ENCFF270OWF 133 bp overlap
ChIP SK-N-SH ENCFF270OWF 134 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 184 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 409 bp overlap
TFAP4::FLI1 4 datasets
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_48h DE_48h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 170 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 209 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 355 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 142 bp overlap
ZFP14 3 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 249 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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