chr6 : 39,196,652 – 39,197,016
364 bp 78 TFs 0 linked genes
This 364 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:39,191,652 – 39,202,016
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 217 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 354 bp overlap
ChIP K562 ENCFF938UXQ 222 bp overlap
ATF3 4 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 115 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 122 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 301 bp overlap
ChIP K562 ENCFF604FPV 238 bp overlap
BCL11A 8 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 63 bp overlap
ChIP CD34_Day7_15min GSE104676.BCL11A.CD34_Day7_15min 64 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 68 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 73 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 104 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 54 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 74 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 302 bp overlap
BRD3 5 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 202 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 263 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 207 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 223 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 352 bp overlap
BRD4 7 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 268 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 364 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 302 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 364 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 305 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 353 bp overlap
ChIP SEM GSE83671.BRD4.SEM 243 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 355 bp overlap
ChIP K562 ENCFF963TXY 328 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 364 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 364 bp overlap
ChIP K562 ENCFF673OEZ 349 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 207 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 180 bp overlap
CREB1 1 dataset
ChIP K-562 ENCSR000BSO.CREB1.K-562 125 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 356 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 227 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 288 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 111 bp overlap
ChIP K562 ENCFF226VMS 215 bp overlap
ESR1 4 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 297 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 271 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 87 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 327 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 364 bp overlap
ChIP K-562 ENCSR000DKB.FOS.K-562 166 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 213 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 221 bp overlap
FOSL1 4 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 330 bp overlap
ChIP K-562 ENCSR000BMV.FOSL1.K-562 235 bp overlap
ChIP K562 ENCFF455MKD 364 bp overlap
ChIP K562 ENCFF728OTE 219 bp overlap
FOSL2 1 dataset
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 291 bp overlap
ChIP DE DE-FOXA2-2 364 bp overlap
GABPA 2 datasets
ChIP K-562 ENCSR000BLO.GABPA.K-562 267 bp overlap
ChIP K562 ENCFF996TSW 213 bp overlap
GATA1 12 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 125 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 183 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 147 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 73 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 238 bp overlap
ChIP K-562 ENCSR000EWM.GATA1.K-562 187 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 151 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 302 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 299 bp overlap
ChIP erythroblast ENCFF867JAR 364 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 303 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 223 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 225 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 208 bp overlap
ChIP K562 ENCFF513FTZ 285 bp overlap
ChIP K562 ENCFF544PCK 194 bp overlap
GATA3 1 dataset
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 215 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 338 bp overlap
ChIP DE DE-GATA4-2 364 bp overlap
ChIP foregut GSE117136.GATA4.foregut 253 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 163 bp overlap
ChIP DE DE-GATA6-1 353 bp overlap
ChIP DE DE-GATA6-2 364 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 269 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 363 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 364 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 325 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 281 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 175 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 364 bp overlap
ChIP foregut GSE117136.GATA6.foregut 176 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 362 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 285 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 201 bp overlap
ChIP GM12878 ENCFF824TGK 364 bp overlap
ChIP K562 ENCFF771OHZ 347 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 221 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 251 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 240 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 364 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 283 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 150 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 115 bp overlap
JUNB 3 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 364 bp overlap
ChIP K-562 ENCSR000DJY.JUNB.K-562 360 bp overlap
ChIP K562 ENCFF388SEP 333 bp overlap
JUND 5 datasets
ChIP HCT116 ENCFF748ZQX 332 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 215 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 183 bp overlap
ChIP K562 ENCFF336RCR 356 bp overlap
ChIP K562 ENCFF830LVJ 261 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 281 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 286 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 234 bp overlap
ChIP K562 ENCFF464PIV 233 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 154 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 364 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR113LAS.MTA2.K-562 199 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 252 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 253 bp overlap
NCOR1 5 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 299 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 258 bp overlap
ChIP K562 ENCFF788MPU 125 bp overlap
ChIP K562 ENCFF866HRM 288 bp overlap
ChIP LS180_125 GSE39277.NCOR1.LS180_125 105 bp overlap
NELFE 2 datasets
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 173 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 86 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 168 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 297 bp overlap
ChIP K562 ENCFF167YID 165 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 227 bp overlap
ChIP K562 ENCFF004YPK 232 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 227 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 353 bp overlap
POLR2A 4 datasets
ChIP K562 ENCFF262YXJ 364 bp overlap
ChIP K562 ENCFF262YXJ 256 bp overlap
ChIP K562 ENCFF514URW 248 bp overlap
ChIP Peyer's patch ENCFF990IYL 169 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 323 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 265 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 158 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 204 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 99 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 229 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 364 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 364 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 364 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap
SMAD3 2 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 158 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 197 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 173 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 208 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 293 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 234 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 263 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 194 bp overlap
SPI1 1 dataset
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 93 bp overlap
STAT3 10 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 154 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 231 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 316 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 190 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 316 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 245 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 300 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 250 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 349 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 262 bp overlap
STAT5A 1 dataset
ChIP K-562 ENCSR000BRR.STAT5A.K-562 214 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 250 bp overlap
TAL1 16 datasets
ChIP CD34 GSE52924.TAL1.CD34 166 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 149 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 338 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 322 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 256 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.TAL1.K-562_MYO1D-Hub_KO 241 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 246 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 313 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 283 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 310 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 331 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 309 bp overlap
ChIP K562 ENCFF620GMX 260 bp overlap
ChIP K562 ENCFF661CCK 244 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 216 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 189 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 100 bp overlap
TCF12 5 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 95 bp overlap
ChIP K-562 ENCSR744WOO.TCF12.K-562 350 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 302 bp overlap
ChIP K562 ENCFF909RDY 332 bp overlap
ChIP K562 ENCFF931DJY 290 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 199 bp overlap
TCF3 4 datasets
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 156 bp overlap
ChIP K-562 ENCSR970OJY.TCF3.K-562 325 bp overlap
ChIP K562 ENCFF319QZT 108 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 262 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 266 bp overlap
TFAP4 2 datasets
ChIP DLD-1 GSE46935.TFAP4.DLD-1 233 bp overlap
ChIP K562 ENCFF727PXG 364 bp overlap
TRIM24 5 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 318 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 218 bp overlap
ChIP K562 ENCFF284DKY 228 bp overlap
ChIP K562 ENCFF616RIL 364 bp overlap
ChIP K562 ENCFF616RIL 176 bp overlap
TRIM28 1 dataset
ChIP K-562 ENCSR000BRW.TRIM28.K-562 213 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 241 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 195 bp overlap
ZEB2 3 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 301 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 239 bp overlap
ChIP K562 ENCFF795CMH 364 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 245 bp overlap
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