chr6 : 5,438,974 5,439,475
501 bp 67 TFs 2 linked genes
This 501 bp open chromatin element is linked to FARS2 and LYRM4 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
FARS2 177.7 kb Distal Multiome
LYRM4 178.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:5,433,974 – 5,444,475
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE43720.AR.LNCaP 136 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 143 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 408 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 140 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 208 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 328 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 198 bp overlap
BRD4 4 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 170 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 375 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 270 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 249 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 140 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 299 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 267 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 243 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 259 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 375 bp overlap
ChIP BLaER1 ENCFF364PUR 271 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 242 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 217 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 289 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 164 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 123 bp overlap
FOXA1 4 datasets
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 79 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 287 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 57 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 139 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 334 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 146 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 246 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 358 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 379 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 387 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 305 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 261 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 148 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 347 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 280 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 369 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 179 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 233 bp overlap
ChIP H1 ENCFF747ZPQ 196 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 501 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 494 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 267 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 501 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 501 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 431 bp overlap
ChIP hESC GSE20650.NANOG.hESC 270 bp overlap
ChIP hESC GSE18292.NANOG.hESC 162 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 199 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 206 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 234 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 251 bp overlap
NKX2-2 2 datasets
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 199 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 501 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 254 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 466 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 501 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 198 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 255 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 270 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 171 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 305 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 332 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 230 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 179 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 354 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 254 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 101 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 291 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 501 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 477 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 377 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 366 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 286 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 263 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 276 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 297 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 243 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 226 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 333 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 270 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 323 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 313 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 180 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 499 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 163 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 208 bp overlap
SOX2 3 datasets
ChIP RENVM GSE49404.SOX2.RENVM 137 bp overlap
ChIP hESC GSE69479.SOX2.hESC 207 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 292 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 258 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 289 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 198 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 133 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 226 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 217 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 169 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 199 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 202 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 274 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 183 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 380 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 428 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 204 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 168 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 207 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 284 bp overlap
ZNF343 2 datasets
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap