chr5 : 159,442,094 – 159,442,787
693 bp 60 TFs 4 linked genes
This 693 bp open chromatin element is linked to 4 target genes and is bound by 60 transcription factors.
Linked Genes
4 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000249738 131.8 kb Distal Multiome
UBLCP1 179.2 kb Distal Multiome
RNF145 233.0 kb Distal Multiome
TTC1 566.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:159,437,094 – 159,447,787
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 504 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 333 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 180 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 169 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 215 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 268 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 123 bp overlap
CTCF 52 datasets
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 284 bp overlap
ChIP AG04450 ENCFF116DJL 297 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 54 bp overlap
ChIP H9 ENCFF152GTF 163 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 200 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 175 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 172 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 486 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 247 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 141 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 100 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 184 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 153 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 111 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 364 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 153 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 161 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 94 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP RWPE2 ENCFF911IEE 265 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 125 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 137 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 70 bp overlap
ChIP brain ENCFF163BBN 77 bp overlap
ChIP brain ENCFF163BBN 539 bp overlap
ChIP brain ENCFF163BBN 541 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 173 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 197 bp overlap
ChIP endodermal cell ENCFF471YCZ 234 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 142 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 133 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 159 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 484 bp overlap
ChIP heart left ventricle ENCFF354HOQ 461 bp overlap
ChIP heart left ventricle ENCFF354HOQ 454 bp overlap
ChIP hepatocyte ENCFF263BLJ 345 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 221 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 212 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 160 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 218 bp overlap
ChIP nephron ENCFF411ACD 490 bp overlap
ChIP nephron ENCFF972IQB 465 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 321 bp overlap
ChIP neural progenitor cell ENCFF420RBO 161 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 456 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 167 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 117 bp overlap
ChIP BLaER1 ENCFF798NMV 133 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 181 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 211 bp overlap
EP300 2 datasets
ChIP H1 ENCFF937OPV 185 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 190 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 182 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 379 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 93 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 167 bp overlap
FOXP2 2 datasets
ChIP PFSK-1 ENCFF349WGE 258 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 147 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 363 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 475 bp overlap
ChIP DE DE-GATA4-2 541 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 387 bp overlap
ChIP DE DE-GATA6-2 565 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 322 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 347 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 422 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 52 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 312 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 385 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 458 bp overlap
KDM1A 1 dataset
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 164 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 163 bp overlap
MYCN 1 dataset
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 149 bp overlap
MYOD1 6 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 212 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 205 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 476 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 180 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 304 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 191 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 251 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 225 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 281 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 285 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 297 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 333 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 280 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 270 bp overlap
ONECUT1 5 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP liver ERP002306.ONECUT1.liver 117 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 430 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
POLR2A 4 datasets
ChIP spleen ENCFF446ZGT 266 bp overlap
ChIP transverse colon ENCFF840PXT 321 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 323 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 150 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 251 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 142 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 278 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP K562 ENCFF634XYR 365 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 221 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 144 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 167 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 131 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 455 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
SMAD3 2 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 250 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 172 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 693 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 147 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 177 bp overlap
SNAI2 3 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 313 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 195 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 233 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 423 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 198 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 149 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 275 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 320 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 121 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 115 bp overlap
ZNF148 1 dataset
ChIP K-562 ENCSR018MSO.ZNF148.K-562 233 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 138 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 373 bp overlap
ZNF341 6 datasets
ChIP HEK293 ENCFF944VMC 301 bp overlap
ChIP HEK293 ENCFF944VMC 179 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 356 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 180 bp overlap
ChIP HIES_EBV-B_ZNF341_isoform1 GSE113194.ZNF341.HIES_EBV-B_ZNF341_isoform1 164 bp overlap
ChIP HIES_EBV-B_ZNF341_isoform2 GSE113194.ZNF341.HIES_EBV-B_ZNF341_isoform2 202 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 110 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 172 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
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