UBLCP1
ubiquitin like domain containing CTD phosphatase 1 | CPUB1, MGC10067
UBLCP1 — as a Regulated Gene

TFs regulating UBLCP1 0 TFs

Transcription factors with Perturb-seq knockdown data for UBLCP1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = UBLCP1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to UBLCP1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of UBLCP1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr5:159,099,838–159,101,146 162.8 kb Distal (>10kb) Multiome 500
chr5:159,208,643–159,210,083 53.7 kb Distal (>10kb) Multiome 898
chr5:159,262,736–159,263,791 19 bp At TSS Multiome 849
chr5:159,331,221–159,332,012 68.4 kb Distal (>10kb) Multiome 487
chr5:159,416,519–159,417,760 154.0 kb Distal (>10kb) Multiome 142
chr5:159,442,094–159,442,787 179.2 kb Distal (>10kb) Multiome 60
chr5:159,510,131–159,510,890 247.2 kb Distal (>10kb) Multiome 235
chr5:159,971,757–159,973,420 708.9 kb Distal (>10kb) Multiome HiCAR 189
chr5:159,986,837–159,987,682 724.2 kb Distal (>10kb) Multiome HiCAR 416
chr5:160,008,719–160,009,383 745.8 kb Distal (>10kb) Multiome HiCAR 737

Genome Browser

Genomic view of the UBLCP1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr5:159,089,838 – 160,019,383
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq