chr5 : 95,686,759 – 95,686,953
194 bp 59 TFs 1 linked gene
This 194 bp open chromatin element is linked to SPATA9 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SPATA9 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:95,681,759 – 95,691,953
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 178 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 175 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 139 bp overlap
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 167 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 126 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 167 bp overlap
ARID1A 4 datasets
ChIP 12Z GSE129781.ARID1A.12Z 194 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 194 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 194 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 59 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 170 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 192 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 114 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 126 bp overlap
ChIP BLaER1 ENCFF680YXW 157 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 121 bp overlap
ELL2 1 dataset
ChIP HeLa GSE40632.ELL2.HeLa 194 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 127 bp overlap
EP300 5 datasets
ChIP HeLa-S3 ENCFF245KNK 194 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 162 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 166 bp overlap
ChIP MCF-7 ENCSR000BTR.EP300.MCF-7 121 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 166 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 109 bp overlap
ESR1 18 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 194 bp overlap
ChIP MCF-7 GSE128445.ESR1.MCF-7 194 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 167 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 179 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 156 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 194 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 151 bp overlap
ChIP MCF-7_EtOH_KO GSE136673.ESR1.MCF-7_EtOH_KO 142 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 156 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 194 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 194 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 151 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT_SRC-3 144 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 151 bp overlap
ChIP MCF-7_shFbxo_OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_OHT_SRC-3 144 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 185 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 156 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 194 bp overlap
FOSL2 2 datasets
ChIP SK-N-SH ENCFF127ZDW 194 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 160 bp overlap
FOXA1 1 dataset
ChIP MCF-7 ERP001226.FOXA1.MCF-7 152 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 194 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 186 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 194 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 126 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 144 bp overlap
GATA2 11 datasets
ChIP ESF GSE108408.GATA2.ESF 194 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 194 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 175 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 194 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 118 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 194 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 194 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 194 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 194 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 194 bp overlap
GATA3 19 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 187 bp overlap
ChIP MCF-7 ENCFF352QVM 194 bp overlap
ChIP MCF-7 ENCFF437NQS 131 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 174 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 194 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 194 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 194 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 194 bp overlap
ChIP MCF-7 GSE117492.GATA3.MCF-7 161 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 135 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 191 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 167 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 160 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 165 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 147 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 194 bp overlap
ChIP SK-N-SH ENCFF040SSB 194 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 194 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 194 bp overlap
GATA3_Cter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Cter.T-47D_CR3flp 194 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Cter.T-47D_flp-ctrl 165 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 194 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 194 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 132 bp overlap
ChIP DE DE-GATA4-1 194 bp overlap
ChIP DE DE-GATA4-2 194 bp overlap
ChIP foregut GSE117136.GATA4.foregut 194 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 194 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 194 bp overlap
ChIP DE DE-GATA6-2 194 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 194 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 194 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 194 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 194 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 194 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 194 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 194 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 194 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 194 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 194 bp overlap
ChIP K562 ENCFF348IBL 194 bp overlap
ChIP K562 ENCFF771OHZ 194 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 171 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 155 bp overlap
JUND 3 datasets
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 175 bp overlap
ChIP SK-N-SH ENCFF551NEQ 194 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 167 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 164 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 108 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 194 bp overlap
NR3C1 1 dataset
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 173 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 194 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 194 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 193 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 132 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCSR000BVG.RXRA.SK-N-SH 161 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 194 bp overlap
SMAD4 1 dataset
ChIP HGrC1_EV GSE138496.SMAD4.HGrC1_EV 128 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 104 bp overlap
ChIP A-549_AG15687 GSE132290.SMARCA4.A-549_AG15687 151 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 113 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 194 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 194 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 194 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 166 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 194 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 194 bp overlap
SMC1A 2 datasets
ChIP MCF-7 GSE115602.SMC1A.MCF-7 194 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 128 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 142 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 194 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 194 bp overlap
STAT3 10 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 194 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 194 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 151 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 179 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 126 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 158 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 194 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 194 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 194 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 194 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 180 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 105 bp overlap
TCF7L2 1 dataset
ChIP HeLa-S3 ENCFF673QAB 194 bp overlap
TEAD1 3 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 114 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 194 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 190 bp overlap
TEAD4 10 datasets
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 194 bp overlap
ChIP MCF-7 ENCSR000BUO.TEAD4.MCF-7 156 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 147 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 194 bp overlap
ChIP MCF-7_ICI GSE125594.TEAD4.MCF-7_ICI 186 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 194 bp overlap
ChIP SK-N-SH ENCFF754TJT 194 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 194 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 194 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 149 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 143 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 157 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 194 bp overlap
YAP1 1 dataset
ChIP MCF-7 GSE107013.YAP1.MCF-7 176 bp overlap
YY1AP1 4 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 194 bp overlap
ChIP MCF-7_ICI GSE125594.YY1AP1.MCF-7_ICI 172 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 194 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 194 bp overlap
ZBTB2 2 datasets
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 194 bp overlap
ChIP K562 ENCFF290ESQ 194 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 123 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 127 bp overlap
ZNF175 1 dataset
ChIP HEK293 GSE76494.ZNF175.HEK293 118 bp overlap
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