chr5 : 54,774,142 54,775,021
879 bp 71 TFs 0 linked genes
This 879 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:54,769,142 – 54,780,021
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 215 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 741 bp overlap
ChIP K562 ENCFF817JQF 551 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 265 bp overlap
BRD4 11 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 458 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 329 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 830 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 826 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 264 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 192 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 567 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 113 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 493 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 65 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 155 bp overlap
CD74 2 datasets
ChIP CLL_p1 GSE88955.CD74.CLL_p1 179 bp overlap
ChIP CLL_p4 GSE88955.CD74.CLL_p4 244 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 103 bp overlap
CEBPB 5 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 200 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 176 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 151 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 147 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR490LWA.CEBPG.K-562 289 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 67 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 114 bp overlap
CTCF 2 datasets
Motif DE_60h DE_60h-CTCF_MA1930.2 33 bp overlap
ChIP endodermal cell ENCFF471YCZ 72 bp overlap
Cebpa 7 datasets
ChIP BLaER1 ENCFF031ISE 139 bp overlap
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF274GAT 254 bp overlap
ChIP BLaER1 ENCFF335XTP 300 bp overlap
ChIP BLaER1 ENCFF346MCV 257 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF460KDD 278 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 267 bp overlap
ChIP K562 ENCFF191BFW 365 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 239 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 212 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 158 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 173 bp overlap
EZH2 3 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 184 bp overlap
ChIP peripheral-blood-mononuclear-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell 240 bp overlap
ChIP peripheral-blood-mononuclear-cell_mut GSE115772.EZH2.peripheral-blood-mononuclear-cell_mut 188 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 192 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 519 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 482 bp overlap
ChIP DE DE-GATA4-2 615 bp overlap
ChIP foregut GSE117136.GATA4.foregut 349 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 563 bp overlap
ChIP DE DE-GATA6-2 572 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 572 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 318 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 473 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 468 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 508 bp overlap
ChIP foregut GSE117136.GATA6.foregut 413 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 271 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 151 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 262 bp overlap
ChIP K562 ENCFF348IBL 505 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 82 bp overlap
Isl1 1 dataset
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
JUN 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 277 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 116 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 101 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 165 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 198 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 125 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 142 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 264 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 170 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 173 bp overlap
MAX 1 dataset
ChIP K562 ENCFF110LJS 109 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 321 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 244 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 76 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 78 bp overlap
NR2C1 2 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 286 bp overlap
ChIP K562 ENCFF568JLK 411 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
ChIP K562 ENCFF750AXF 836 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 155 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 175 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 197 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 75 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 321 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 203 bp overlap
POLR2A 7 datasets
ChIP spleen ENCFF446ZGT 150 bp overlap
ChIP stomach ENCFF607ZPU 169 bp overlap
ChIP stomach ENCFF820WZN 168 bp overlap
ChIP suprapubic skin ENCFF083NEJ 140 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 94 bp overlap
ChIP vagina ENCFF305NWS 267 bp overlap
ChIP vagina ENCFF384GAB 351 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 170 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 182 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 63 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 430 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 336 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 247 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 879 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 810 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 739 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 607 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 547 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 662 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 662 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 669 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 242 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 333 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 289 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 294 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 195 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 133 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 87 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TEAD1 1 dataset
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
VENTX 1 dataset
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 103 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 66 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZNF8 1 dataset
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap