chr5 : 40,909,362 40,909,589
227 bp 62 TFs 1 linked gene
This 227 bp open chromatin element is linked to C7 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
C7 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:40,904,362 – 40,914,589
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 81 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 144 bp overlap
ChIP K562 ENCFF938UXQ 115 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 227 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 227 bp overlap
BRD4 2 datasets
ChIP BE2C GSE80151.BRD4.BE2C 227 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 227 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 130 bp overlap
ChIP K562 ENCFF963TXY 67 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 189 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 129 bp overlap
ChIP K562 ENCFF673OEZ 171 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 227 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 227 bp overlap
CREBBP 2 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 112 bp overlap
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 109 bp overlap
CREM 1 dataset
ChIP HepG2 ENCFF049UDY 64 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 181 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 180 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 208 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 227 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 131 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 187 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 92 bp overlap
EZH2 1 dataset
ChIP HeLa-S3 ENCFF318LHU 227 bp overlap
GATA1 5 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 65 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 106 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 109 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 68 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 89 bp overlap
GATA2 9 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 212 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 104 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 92 bp overlap
ChIP K562 ENCFF830LLA 227 bp overlap
ChIP SH-SY5Y ENCFF485YIB 227 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 223 bp overlap
ChIP SK-N-SH ENCFF764OZD 206 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 194 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 218 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 94 bp overlap
ChIP SK-N-SH ENCFF040SSB 198 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 202 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 124 bp overlap
GFI1B 3 datasets
ChIP K-562 ENCSR509GDT.GFI1B.K-562 155 bp overlap
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 100 bp overlap
ChIP SET-2_GSK_insR GSE121424.GFI1B.SET-2_GSK_insR 143 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 119 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 142 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 118 bp overlap
ChIP K562 ENCFF968WBH 227 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 191 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 94 bp overlap
ChIP K562 ENCFF744ALD 132 bp overlap
JUN 1 dataset
ChIP BT-549 GSE71976.JUN.BT-549 119 bp overlap
KDM1A 8 datasets
ChIP K-562 GSE117944.KDM1A.K-562 227 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 158 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 156 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 109 bp overlap
ChIP K562 ENCFF128TYE 102 bp overlap
ChIP K562 ENCFF133OLU 118 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 197 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 81 bp overlap
ChIP K562 ENCFF464PIV 158 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 204 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 77 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 132 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 164 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 227 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 215 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 150 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 110 bp overlap
ChIP K562 ENCFF788MPU 172 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 167 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 131 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 97 bp overlap
ChIP K562 ENCFF167YID 214 bp overlap
NR2F2 5 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 128 bp overlap
ChIP liver ENCFF427MRU 223 bp overlap
ChIP liver ENCFF565JGD 136 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 227 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 176 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 106 bp overlap
ChIP K562 ENCFF674RQA 227 bp overlap
NR5A1 1 dataset
ChIP HepG2 ENCFF970YZO 218 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 202 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 227 bp overlap
POLR2A 17 datasets
ChIP SK-N-SH ENCFF683PFH 227 bp overlap
ChIP adrenal gland ENCFF843OBJ 227 bp overlap
ChIP body of pancreas ENCFF501FEC 126 bp overlap
ChIP body of pancreas ENCFF675RCN 227 bp overlap
ChIP body of pancreas ENCFF727UBE 227 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 145 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 227 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 227 bp overlap
ChIP ovary ENCFF425PQK 227 bp overlap
ChIP right lobe of liver ENCFF026NCK 227 bp overlap
ChIP sigmoid colon ENCFF725QFT 227 bp overlap
ChIP sigmoid colon ENCFF748YVT 227 bp overlap
ChIP sigmoid colon ENCFF754JQR 227 bp overlap
ChIP spleen ENCFF044PYR 197 bp overlap
ChIP spleen ENCFF955VIQ 212 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 227 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 227 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 227 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 227 bp overlap
RCOR1 3 datasets
ChIP K562 ENCFF216EEJ 150 bp overlap
ChIP SK-N-SH ENCFF518EXB 227 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 227 bp overlap
REST 2 datasets
ChIP liver ENCSR867WPH.REST.liver 100 bp overlap
ChIP liver ENCSR893QWP.REST.liver 147 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 158 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 98 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 227 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 227 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 163 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 227 bp overlap
STAT5A 2 datasets
ChIP K-562 ENCSR000BRR.STAT5A.K-562 138 bp overlap
ChIP K562 ENCFF226BTJ 154 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 136 bp overlap
TAL1 14 datasets
ChIP CD34 GSE52924.TAL1.CD34 62 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 158 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 52 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 155 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 174 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 104 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 132 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 110 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 131 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 105 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 86 bp overlap
ChIP K562 ENCFF620GMX 72 bp overlap
ChIP K562 ENCFF661CCK 122 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 114 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 169 bp overlap
ChIP K562 ENCFF931DJY 99 bp overlap
ChIP SK-N-SH ENCFF147AHB 202 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 183 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 100 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 140 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 80 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 202 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 94 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 94 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 171 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 133 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 227 bp overlap