chr5 : 36,596,123 36,596,706
583 bp 93 TFs 3 linked genes
This 583 bp open chromatin element is linked to SLC1A3, NIPBL-DT, and NIPBL and is bound by 93 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SLC1A3 at TSS At TSS Proximity
NIPBL-DT 280.2 kb Distal Multiome
NIPBL 280.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:36,591,123 – 36,601,706
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
ATF4 2 datasets
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
CEBPG 2 datasets
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 170 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
EGR1 1 dataset
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK1::HOXA1 2 datasets
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif ES_0h ES_0h-ELK1HOXA1_MA1931.1 14 bp overlap
ELK4 2 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
ESR1 1 dataset
ChIP T-47D ENCSR000BKN.ESR1.T-47D 101 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV3 2 datasets
Motif DE_12h DE_12h-ETV3_MA0763.2 9 bp overlap
Motif ES_0h ES_0h-ETV3_MA0763.2 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 111 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 269 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 178 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JDP2 2 datasets
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
Motif ES_0h ES_0h-JDP2_MA0655.1 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 285 bp overlap
JUND 3 datasets
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Motif ES_0h ES_0h-JUND_MA0491.3 9 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 155 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 161 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 338 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 267 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 583 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 496 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 213 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 583 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 501 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 286 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFE2 2 datasets
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU2F1 3 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 3 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 8 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 501 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 562 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 583 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 452 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 227 bp overlap
POU5F1B 3 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 169 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 235 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 274 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 186 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 530 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 427 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 331 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 197 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 393 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 344 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 145 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 502 bp overlap
STAT3 1 dataset
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 170 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 475 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 354 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 287 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap