chr4 : 185,086,154 185,086,597
443 bp 81 TFs 1 linked gene
This 443 bp open chromatin element is linked to LINC02436 and is bound by 81 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02436 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:185,081,154 – 185,091,597
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AFF1 3 datasets
ChIP K-562 ENCSR241LIH.AFF1.K-562 332 bp overlap
ChIP K562 ENCFF096RYC 254 bp overlap
ChIP K562 ENCFF096RYC 389 bp overlap
AR 13 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 409 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 347 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 443 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 149 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 203 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 184 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 265 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 122 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 338 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 129 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 443 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 343 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 156 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 239 bp overlap
ChIP hESC GSE33281.BRD4.hESC 133 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 207 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 140 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 198 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 281 bp overlap
CTCF 2 datasets
ChIP U-937 ERP008568.CTCF.U-937 215 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 187 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 386 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 132 bp overlap
DIDO1 1 dataset
ChIP K-562 ENCSR167JBG.DIDO1.K-562 223 bp overlap
E2F6 5 datasets
ChIP H1 ENCFF785DWK 277 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 144 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 365 bp overlap
ChIP K562 ENCFF136LTS 241 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 193 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 191 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 297 bp overlap
ChIP K562 ENCFF053BWO 188 bp overlap
ERG 3 datasets
ChIP ME-1 GSE46044.ERG.ME-1 166 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 217 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 230 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 197 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 219 bp overlap
ESRRA 2 datasets
ChIP WTC11 ENCFF591YCA 241 bp overlap
ChIP WTC11 ENCFF591YCA 424 bp overlap
FLI1 2 datasets
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 352 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 214 bp overlap
FOXA1 6 datasets
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 159 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 167 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 364 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 209 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 109 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 54 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 220 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 151 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 245 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 185 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 268 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 197 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 195 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 443 bp overlap
ChIP K562 ENCFF320EQC 329 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 173 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 247 bp overlap
MAX 7 datasets
ChIP H1 ENCFF914VQY 204 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 132 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 153 bp overlap
ChIP K562 ENCFF524IJO 218 bp overlap
ChIP K562 ENCFF524IJO 397 bp overlap
ChIP WTC11 ENCFF223QFY 343 bp overlap
ChIP WTC11 ENCFF223QFY 443 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 101 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 160 bp overlap
MGA 2 datasets
ChIP K-562 ENCSR710WLO.MGA.K-562 371 bp overlap
ChIP K562 ENCFF140CEX 181 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 170 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 299 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 135 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 175 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 215 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 162 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 209 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 279 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 262 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 307 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 443 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 196 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 439 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 198 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 76 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 378 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 168 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 187 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 214 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 205 bp overlap
REST 36 datasets
ChIP GM23338 ENCFF024TCL 146 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 102 bp overlap
ChIP H1 ENCFF203SWY 266 bp overlap
ChIP H1 ENCFF429RUE 58 bp overlap
ChIP HEK293 ENCFF073DOT 223 bp overlap
ChIP HEK293 ENCFF073DOT 426 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 196 bp overlap
ChIP HL-60 ENCFF589LOF 64 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 122 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 99 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 111 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 96 bp overlap
ChIP HepG2 ENCFF122AWR 169 bp overlap
ChIP Ishikawa ENCFF456OHV 182 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 123 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 215 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 249 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 132 bp overlap
ChIP K562 ENCFF430APM 87 bp overlap
ChIP K562 ENCFF688UKW 122 bp overlap
ChIP K562 ENCFF758CZL 303 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 65 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 68 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 109 bp overlap
ChIP PFSK-1 ENCFF668WMP 109 bp overlap
ChIP PFSK-1 ENCFF845VHA 149 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 107 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 72 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 202 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 121 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 356 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 149 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 187 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 187 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 76 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 202 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR076YPO.RNF2.K-562 169 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 253 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 194 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 194 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 200 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 348 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 150 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 241 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 225 bp overlap
SPI1 3 datasets
ChIP HL-60 ENCFF645GBT 152 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 68 bp overlap
ChIP macrophage_IL4 GSE47188.SPI1.macrophage_IL4 202 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 204 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 194 bp overlap
SUZ12 2 datasets
ChIP K-562 ENCSR412CTM.SUZ12.K-562 124 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 116 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 135 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 282 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 229 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 307 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 84 bp overlap
TP63 3 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 267 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 135 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM28 2 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 194 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 203 bp overlap
VEZF1 2 datasets
ChIP K562 ENCFF053XDV 305 bp overlap
ChIP K562 ENCFF053XDV 443 bp overlap
YY1 1 dataset
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 115 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 306 bp overlap
ChIP K562 ENCFF875HLX 168 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 91 bp overlap
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 164 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 443 bp overlap
ZNF143 6 datasets
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 283 bp overlap
ChIP HepG2 ENCFF658YIR 350 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 245 bp overlap
ChIP K562 ENCFF554TVF 375 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 154 bp overlap
ChIP WTC11 ENCFF249JUK 392 bp overlap
ZNF563 2 datasets
ChIP HEK293 GSE76494.ZNF563.HEK293 153 bp overlap
ChIP HepG2 ENCFF736TZS 407 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 153 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 241 bp overlap