chr4 : 163,244,924 – 163,245,747
823 bp 96 TFs 0 linked genes
This 823 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:163,239,924 – 163,250,747
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 474 bp overlap
ChIP K562 ENCFF938UXQ 329 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 392 bp overlap
ChIP K562 ENCFF963TXY 173 bp overlap
CBFA2T3 4 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 83 bp overlap
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 481 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 351 bp overlap
ChIP K562 ENCFF673OEZ 335 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 165 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 59 bp overlap
CDX4 1 dataset
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CEBPB 4 datasets
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 228 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 154 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP K562 ENCFF194QGF 321 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 183 bp overlap
CLOCK 1 dataset
ChIP BA10_2 GSE96659.CLOCK.BA10_2 179 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 242 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 246 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
EP300 4 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 210 bp overlap
ChIP K562 ENCFF226VMS 317 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 483 bp overlap
ChIP neural cell ENCFF442QNK 54 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 499 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 641 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 73 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 409 bp overlap
ChIP DE DE-FOXA2-2 493 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 238 bp overlap
GATA1 10 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 60 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 138 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 232 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 215 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 126 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 358 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 160 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 237 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 252 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 578 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 141 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 260 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 638 bp overlap
ChIP DE DE-GATA4-2 745 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 545 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 481 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 225 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 663 bp overlap
ChIP DE DE-GATA6-2 823 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 459 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 480 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 774 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 526 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 593 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 615 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 145 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 323 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 306 bp overlap
ChIP K562 ENCFF928TKZ 457 bp overlap
ChIP K562 ENCFF968WBH 521 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 342 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 457 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 116 bp overlap
ChIP K562 ENCFF744ALD 242 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
HOXB9 1 dataset
Motif DE_60h DE_60h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_60h DE_60h-HOXC10_MA0905.2 9 bp overlap
HOXC9 1 dataset
Motif DE_60h DE_60h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_60h DE_60h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
Hoxa11 1 dataset
Motif DE_60h DE_60h-Hoxa11_MA0911.2 9 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 270 bp overlap
ChIP K562 ENCFF348IBL 505 bp overlap
KDM1A 5 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 271 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 164 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 213 bp overlap
ChIP K562 ENCFF128TYE 461 bp overlap
ChIP K562 ENCFF133OLU 461 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 171 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 701 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 109 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 495 bp overlap
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
MEIS2 3 datasets
Motif DE_60h DE_60h-MEIS2_MA1640.2 9 bp overlap
ChIP K-562 ENCSR851BNE.MEIS2.K-562 421 bp overlap
ChIP K562 ENCFF320GSD 168 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 114 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 467 bp overlap
ChIP K562 ENCFF866HRM 190 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 159 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 256 bp overlap
ChIP K562 ENCFF167YID 205 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 199 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 410 bp overlap
ChIP K562 ENCFF674RQA 457 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 155 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
PBX2 3 datasets
Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap
ChIP K-562 ENCSR263DFP.PBX2.K-562 476 bp overlap
ChIP K562 ENCFF286KMN 156 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PKNOX1 1 dataset
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 256 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 312 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 209 bp overlap
POU1F1 1 dataset
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
Pax7 1 dataset
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 203 bp overlap
ChIP neural cell ENCFF882LXX 323 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 253 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 126 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 369 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 326 bp overlap
SMAD5 1 dataset
ChIP K-562 ENCSR000FCD.SMAD5.K-562 258 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 510 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 386 bp overlap
ChIP K562 ENCFF506JCB 517 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 308 bp overlap
ChIP K562 ENCFF690CFF 517 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 133 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 286 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 536 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 426 bp overlap
ChIP K562 ENCFF059YCJ 264 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 171 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 462 bp overlap
TAL1 10 datasets
ChIP CD34 GSE52924.TAL1.CD34 94 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 377 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 385 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 377 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 160 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 179 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 227 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 153 bp overlap
ChIP K562 ENCFF620GMX 385 bp overlap
ChIP K562 ENCFF661CCK 130 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 336 bp overlap
ChIP K562 ENCFF931DJY 160 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 224 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 217 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 256 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 203 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 699 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Huangfu Lab · Publications · Resources · Contact