chr1 : 83,554,252 83,554,684
432 bp 95 TFs 0 linked genes
This 432 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:83,549,252 – 83,559,684
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 380 bp overlap
BHLHE22 2 datasets
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 219 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 255 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 258 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 331 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 285 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 241 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 157 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 295 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 203 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 167 bp overlap
CTCF 91 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 226 bp overlap
ChIP BE2C ENCFF757SRF 285 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 204 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12865 ENCFF067GFI 257 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 111 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM23338 ENCFF531QOI 318 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 213 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 261 bp overlap
ChIP H9 ENCFF152GTF 227 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 256 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 184 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HFF-Myc ENCFF680WYR 377 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 237 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 139 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 145 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 177 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 140 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 191 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 220 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 247 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 193 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 234 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 177 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 283 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 204 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 211 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 198 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 432 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 212 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 228 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 282 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 121 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 210 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 140 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 153 bp overlap
ChIP adrenal gland ENCFF886WNR 348 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 217 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 153 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 218 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 152 bp overlap
ChIP brain ENCFF163BBN 351 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 262 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 279 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 327 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 288 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 246 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 259 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 261 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 235 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 108 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 148 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 174 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 366 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 366 bp overlap
ChIP gastroesophageal sphincter ENCFF582GAX 244 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 307 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 252 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 277 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 232 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 167 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 358 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 251 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 257 bp overlap
ChIP heart left ventricle ENCFF354HOQ 373 bp overlap
ChIP heart left ventricle ENCFF842XRG 312 bp overlap
ChIP heart right ventricle ENCFF027ORH 344 bp overlap
ChIP heart right ventricle ENCFF435TKW 324 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 154 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 280 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 198 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 218 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 207 bp overlap
ChIP osteocyte ENCFF929FPD 356 bp overlap
ChIP spleen ENCSR482PMN.CTCF.spleen 227 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 198 bp overlap
ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 223 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 199 bp overlap
ChIP tibial nerve ENCFF665IWH 342 bp overlap
ChIP tibial-nerve ENCSR793YAD.CTCF.tibial-nerve 131 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 230 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 160 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 237 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 289 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 288 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 229 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 299 bp overlap
ChIP WTC11 ENCFF812SCD 370 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 328 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 265 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 2 datasets
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 289 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 432 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 146 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 324 bp overlap
HSF1 3 datasets
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 255 bp overlap
ChIP MO91 GSE45852.HSF1.MO91 242 bp overlap
ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 93 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 235 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 198 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 298 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 224 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-HUSH-KO GSE95451.MORC2.HeLa_V5-HUSH-KO 265 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 346 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 297 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 177 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NCOR1 1 dataset
ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 208 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 289 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 271 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 170 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 11 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 241 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 239 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 190 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 229 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 271 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 264 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 227 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 233 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 142 bp overlap
ChIP liver ENCFF522JHE 329 bp overlap
RNF2 1 dataset
ChIP WA01 ENCSR784VUY.RNF2.WA01 315 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 337 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 142 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 174 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 263 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 202 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 240 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 135 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 274 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 189 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 264 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 244 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap