chr1 : 9,374,739 9,375,309
570 bp 121 TFs 5 linked genes
This 570 bp open chromatin element is linked to 5 target genes and is bound by 121 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
SPSB1 82.1 kb Distal Multiome
H6PD 140.2 kb Distal Multiome
SLC25A33 164.5 kb Distal Multiome
TMEM201 213.9 kb Distal Multiome
GPR157 246.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:9,369,739 – 9,380,309
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 140 bp overlap
ATF2 3 datasets
Motif DE_48h DE_48h-ATF2_MA1632.2 10 bp overlap
ChIP HEK293 ENCFF194VKZ 350 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 204 bp overlap
Alx1 1 dataset
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 473 bp overlap
CDK8 3 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 150 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 338 bp overlap
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 65 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 272 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 202 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 303 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 404 bp overlap
CTCF 6 datasets
ChIP D721Med ENCFF513FYD 211 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 394 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 149 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 136 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 250 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 80 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DRGX 1 dataset
Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
E2F8 1 dataset
Motif DE_48h DE_48h-E2F8_MA0865.3 9 bp overlap
EMX1 1 dataset
Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 332 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE45822.ESR1.MCF-7 210 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 249 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 290 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 205 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 295 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 288 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 227 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 262 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 162 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 225 bp overlap
ESR2 1 dataset
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
ESX1 1 dataset
Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 149 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 485 bp overlap
ChIP DE DE-FOXA2-2 366 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 144 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 326 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 316 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 299 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 229 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 304 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 570 bp overlap
ChIP DE DE-GATA4-2 570 bp overlap
ChIP foregut GSE117136.GATA4.foregut 394 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 570 bp overlap
ChIP DE DE-GATA6-2 570 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 515 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 401 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 559 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 570 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 433 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 538 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 570 bp overlap
GBX1 1 dataset
Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
GSX1 1 dataset
Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap
HOXA1 1 dataset
Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap
HOXB1 1 dataset
Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
ISX 1 dataset
Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 62 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 359 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 472 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 570 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 366 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 448 bp overlap
LBX1 1 dataset
Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_48h DE_48h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 140 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 545 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 300 bp overlap
MED12 6 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 86 bp overlap
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 128 bp overlap
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 57 bp overlap
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 170 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 317 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 134 bp overlap
MEOX1 1 dataset
Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 268 bp overlap
MIXL1 1 dataset
Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 361 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 435 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 519 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 462 bp overlap
NKX6-2 1 dataset
Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap
NR2C1 1 dataset
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_48h DE_48h-NR2F2_MA1111.2 7 bp overlap
NR4A2 1 dataset
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
NR6A1 1 dataset
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Nr1H2 1 dataset
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 297 bp overlap
PAX4 1 dataset
Motif DE_48h DE_48h-PAX4_MA0068.2 8 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 343 bp overlap
PDX1 1 dataset
Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU6F1 1 dataset
Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
PRRX1 1 dataset
Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap
Ppara 1 dataset
Motif DE_48h DE_48h-Ppara_MA2338.1 7 bp overlap
Prdm4 1 dataset
Motif DE_48h DE_48h-Prdm4_MA1647.3 11 bp overlap
RAX2 1 dataset
Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RORA 2 datasets
Motif DE_48h DE_48h-RORA_MA0071.1 10 bp overlap
Motif DE_48h DE_48h-RORA_MA0072.2 11 bp overlap
RORB 2 datasets
Motif DE_48h DE_48h-RORB_MA1150.2 10 bp overlap
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 247 bp overlap
SCRT1 1 dataset
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_48h DE_48h-SCRT2_MA0744.3 10 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCFF676PLV 475 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 298 bp overlap
SHOX 1 dataset
Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 263 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 570 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 533 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 544 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 510 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 560 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 522 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 570 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 570 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 237 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 527 bp overlap
SRF 2 datasets
Motif DE_48h DE_48h-SRF_MA0083.3 16 bp overlap
Motif DE_48h DE_48h-SRF_MA0083.3 16 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 125 bp overlap
Shox2 1 dataset
Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 277 bp overlap
THRB 1 dataset
Motif DE_48h DE_48h-THRB_MA1575.2 17 bp overlap
TLX2 1 dataset
Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF265CEM 570 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 236 bp overlap
UNCX 1 dataset
Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap
ZNF282 1 dataset
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap