chr4 : 104,416,685 – 104,417,694
1,009 bp 88 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:104,411,685 – 104,422,694
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP Hep-G2 ENCSR000EDP.ARID3A.Hep-G2 125 bp overlap
ATF3 1 dataset
ChIP liver ENCSR205FOW.ATF3.liver 162 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 1 dataset
Motif DE_12h DE_12h-BATFJUN_MA0462.3 7 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 321 bp overlap
Bach1::Mafk 4 datasets
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap
Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap
CDX2 4 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 427 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 543 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 361 bp overlap
CTCF 13 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 168 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 333 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 98 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 144 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 224 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 161 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP islet ERP004003.CTCF.islet 273 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 141 bp overlap
Ddit3::Cebpa 2 datasets
Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap
Motif ES_0h ES_0h-Ddit3Cebpa_MA0019.2 10 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 141 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 275 bp overlap
ESR1_Y537N 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 184 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOS::JUND 1 dataset
Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUN 1 dataset
Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUND 1 dataset
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 2 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF548CXY 357 bp overlap
FOSL2::JUN 1 dataset
Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 87 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 13 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 306 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 653 bp overlap
ChIP GP5D_SIRAD21 GSE51234.HNF4A.GP5D_SIRAD21 401 bp overlap
ChIP HCT-116 GSE62890.HNF4A.HCT-116 461 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 186 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 126 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 564 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 657 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 450 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 286 bp overlap
ChIP liver ENCFF354NRH 120 bp overlap
ChIP liver ENCFF449HPV 266 bp overlap
ChIP liver ERP002306.HNF4A.liver 167 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 310 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN::JUNB 1 dataset
Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap
JUND 3 datasets
ChIP Calu-3 GSE85401.JUND.Calu-3 125 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 102 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 227 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KLF17 2 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
MAF 2 datasets
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 2 datasets
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Mafg 2 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap
NCOR1 3 datasets
ChIP LS180 GSE39277.NCOR1.LS180 125 bp overlap
ChIP LS180 GSE39277.NCOR1.LS180 105 bp overlap
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NCOR2 2 datasets
ChIP LS180_125 GSE39277.NCOR2.LS180_125 157 bp overlap
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 216 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 479 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 222 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 493 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
POLR2A 1 dataset
ChIP transverse colon ENCFF610RWV 174 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PPARG 3 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 292 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 651 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 66 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 283 bp overlap
RAD21 9 datasets
ChIP GP5D GSE51234.RAD21.GP5D 314 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 199 bp overlap
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 263 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 228 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 208 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 174 bp overlap
RELA 1 dataset
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 166 bp overlap
RXR 2 datasets
ChIP LS180 GSE31939.RXR.LS180 152 bp overlap
ChIP LS180_125 GSE31939.RXR.LS180_125 114 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 262 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 312 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 479 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 210 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 507 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 122 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 372 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 142 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 337 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
ZFP42 2 datasets
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 271 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 152 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 110 bp overlap
ZNF274 2 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF382 2 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF384 2 datasets
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 240 bp overlap
ChIP HepG2 ENCFF129PLC 311 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF7 1 dataset
ChIP HepG2 ENCFF983XQI 281 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
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