chr4 : 98,558,447 98,559,107
660 bp 107 TFs 0 linked genes
This 660 bp open chromatin element has no linked target genes and is bound by 107 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:98,553,447 – 98,564,107
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 222 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 660 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 437 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 248 bp overlap
Arid3a 3 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 203 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 126 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 221 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 129 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif ES_0h ES_0h-EBF3_MA1637.2 9 bp overlap
ERF::FOXI1 2 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 109 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXG1 2 datasets
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
Motif ES_0h ES_0h-FOXG1_MA0613.1 8 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXN3 2 datasets
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK3_MA1955.2 13 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 137 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 235 bp overlap
HIC2 3 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HSF1 1 dataset
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 190 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 176 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 230 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYBL2 1 dataset
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 279 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 157 bp overlap
ChIP H1 ENCFF747ZPQ 189 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 660 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 660 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 118 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 618 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 611 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 593 bp overlap
ChIP hESC GSE18292.NANOG.hESC 136 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NKX2-3 2 datasets
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 2 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nkx2-1 2 datasets
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 6 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 660 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 660 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 660 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 501 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 448 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 347 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 660 bp overlap
RARB 2 datasets
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
Motif ES_0h ES_0h-RARB_MA1552.2 13 bp overlap
RARG 2 datasets
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
Motif ES_0h ES_0h-RARG_MA1553.2 13 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 137 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA1555.1 14 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 439 bp overlap
SATB1 1 dataset
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 506 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 660 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 313 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 538 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 660 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 660 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 376 bp overlap
SNAI2 2 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
ChIP RD GSE137168.SNAI2.RD 219 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 237 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 660 bp overlap
ZBTB17 2 datasets
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
Motif ES_0h ES_0h-ZBTB17_MA2102.1 8 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 140 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 314 bp overlap
ZNF214 5 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ChIP HEK293 ENCFF436CTX 231 bp overlap
ChIP HEK293 ENCSR993DED.ZNF214.HEK293 381 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF680 2 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap