chr4 : 80,185,441 80,185,658
217 bp 59 TFs 2 linked genes
This 217 bp open chromatin element is linked to PRDM8 and PRDM8-AS1 and is bound by 59 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PRDM8 1.2 kb Proximal Proximity
PRDM8-AS1 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:80,180,441 – 80,190,658
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 211 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 211 bp overlap
BCOR 4 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 217 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 217 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 217 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 217 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 85 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 217 bp overlap
BRD3 1 dataset
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 147 bp overlap
BRD4 3 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 190 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 193 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 217 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 217 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 175 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 104 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 217 bp overlap
CTCF 10 datasets
ChIP B cell ENCFF506FKC 217 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 217 bp overlap
ChIP Loucy ENCFF359TVQ 185 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 91 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 82 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 217 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 194 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 217 bp overlap
ChIP thoracic aorta ENCFF166PKA 185 bp overlap
ChIP thoracic aorta ENCFF166PKA 217 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 210 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 217 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 217 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 100 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 217 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 217 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 217 bp overlap
EZH2 16 datasets
ChIP A673 ENCFF790MVL 129 bp overlap
ChIP DOHH2 ENCFF528GDC 180 bp overlap
ChIP DOHH2 ENCFF528GDC 217 bp overlap
ChIP GM12878 ENCFF635TDF 217 bp overlap
ChIP GM23338 ENCFF613YON 217 bp overlap
ChIP H1 ENCFF232NZA 217 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 217 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 217 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 217 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 217 bp overlap
ChIP hepatocyte ENCFF118DKH 99 bp overlap
ChIP hepatocyte ENCFF552DZB 217 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 210 bp overlap
ChIP neural cell ENCFF610EPB 198 bp overlap
ChIP neural progenitor cell ENCFF018MKA 217 bp overlap
ChIP neural progenitor cell ENCFF472NFV 217 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 84 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 174 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 217 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 217 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 217 bp overlap
JUN 4 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 191 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 156 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 182 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 195 bp overlap
KMT2A 3 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 90 bp overlap
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 213 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 115 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 217 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 217 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 217 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 137 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 101 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 207 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 217 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 107 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 217 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 112 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 67 bp overlap
PCBP2 1 dataset
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 205 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 217 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 100 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
POLR2A 6 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 117 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 168 bp overlap
ChIP neural cell ENCFF604SPB 217 bp overlap
ChIP prostate gland ENCFF881OMH 217 bp overlap
ChIP sigmoid colon ENCFF754JQR 217 bp overlap
ChIP uterus ENCFF566ZPY 63 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 217 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 70 bp overlap
RNF2 3 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 100 bp overlap
ChIP H1 ENCFF239FFS 217 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 217 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 202 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 217 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 217 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 217 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 128 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 101 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 109 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 217 bp overlap
SUZ12 8 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 217 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 217 bp overlap
ChIP H1 ENCFF881NFR 217 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 159 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 217 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 217 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 217 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 217 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 217 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 131 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 205 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 138 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
USF2 1 dataset
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 125 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF141 1 dataset
ChIP HEK293T GSE78099.ZNF141.HEK293T 130 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ChIP WTC11 ENCFF551GAV 217 bp overlap