chr3 : 171,936,211 171,936,456
245 bp 75 TFs 0 linked genes
This 245 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:171,931,211 – 171,941,456
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 205 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 245 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 70 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 141 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 245 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 120 bp overlap
BRD4 9 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 245 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 80 bp overlap
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 245 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 245 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 232 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 245 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 225 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 64 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 245 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 245 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 91 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 91 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 99 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 102 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 245 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 245 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 245 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 245 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 62 bp overlap
EP300 2 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 163 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 130 bp overlap
ESR1 2 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 137 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 113 bp overlap
ESRRA 3 datasets
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 218 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 245 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 245 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 217 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR000BQO.FOSL2.A-549 245 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 245 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 245 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 245 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 245 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 245 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 245 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 245 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 245 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 116 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 245 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 54 bp overlap
ChIP DE DE-GATA4-2 245 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 152 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 245 bp overlap
GRHL2 3 datasets
ChIP HBE GSE46194.GRHL2.HBE 241 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 245 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 182 bp overlap
GTF3C2 1 dataset
ChIP HeLa-S3 ENCFF144RTV 237 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 245 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 245 bp overlap
HNF4A 3 datasets
ChIP IM95 GSE114018.HNF4A.IM95 215 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 214 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 188 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 245 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 245 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 119 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF238LYK 50 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 245 bp overlap
JUN 2 datasets
ChIP HeLa-S3 ENCFF668QVP 221 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 156 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 245 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 159 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 245 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 245 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 245 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 245 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 118 bp overlap
MED1 3 datasets
ChIP SGBS GSE64233.MED1.SGBS 100 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 245 bp overlap
ChIP myoblast GSE60026.MED1.myoblast 173 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 137 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 87 bp overlap
PGR 6 datasets
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 238 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 245 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 245 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 171 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 213 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 189 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 245 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 128 bp overlap
POLR2A 1 dataset
ChIP HeLa-S3 ENCFF455YYQ 108 bp overlap
PPARG 4 datasets
ChIP ASC GSE21366.PPARG.ASC 245 bp overlap
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 167 bp overlap
ChIP OE33 GSE143195.PPARG.OE33 245 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 66 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 204 bp overlap
RAD21 3 datasets
ChIP MDM GSE103477.RAD21.MDM 145 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 245 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 245 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 196 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 129 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 245 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 245 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 245 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 245 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 245 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 245 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 110 bp overlap
RXRA 2 datasets
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 245 bp overlap
ChIP JMSU-1_RXRA-S427F GSE107734.RXRA.JMSU-1_RXRA-S427F 225 bp overlap
SKIL 1 dataset
ChIP K562 ENCFF560QSF 78 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 245 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 245 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 245 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 245 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 245 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 227 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 245 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 106 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 66 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 51 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 207 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 245 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 115 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 137 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 73 bp overlap
STAT3 5 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 208 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 245 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 245 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 145 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 68 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCFF715NNJ 186 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 245 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 245 bp overlap
TEAD4 6 datasets
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 112 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 198 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 245 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 242 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 245 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 218 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 120 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE51268.TP53.SaOS-2 231 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 55 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 58 bp overlap
YY1AP1 3 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 245 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 245 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 245 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 233 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 94 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 171 bp overlap
ZNF264 3 datasets
ChIP HEK293 GSE76494.ZNF264.HEK293 76 bp overlap
ChIP Hep-G2 ENCSR248BVU.ZNF264.Hep-G2 245 bp overlap
ChIP HepG2 ENCFF453WJV 124 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 115 bp overlap