chr3 : 166,498,635 166,498,747
112 bp 72 TFs 0 linked genes
This 112 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:166,493,635 – 166,503,747
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 58 bp overlap
AR 7 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 112 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 106 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 112 bp overlap
ChIP breast-cancer_ENOB-995 GSE128018.AR.breast-cancer_ENOB-995 112 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.AR.prostate-cancer_PDX_136 108 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 112 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 97 bp overlap
ARID1A 5 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 112 bp overlap
ChIP MCF-7 GSE123284.ARID1A.MCF-7 112 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 112 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 112 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 112 bp overlap
ARID2 1 dataset
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 112 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 112 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 112 bp overlap
BRD4 1 dataset
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 97 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 112 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
ESR1 19 datasets
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 112 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 112 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 112 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 112 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 112 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 112 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 112 bp overlap
ChIP MCF-7_E2_SRC-3 GSE119702.ESR1.MCF-7_E2_SRC-3 110 bp overlap
ChIP MCF-7_H3B-6545 GSE115607.ESR1.MCF-7_H3B-6545 112 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 112 bp overlap
ChIP MCF-7_SRC3 GSE119702.ESR1.MCF-7_SRC3 110 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 112 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 94 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 112 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 112 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 112 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 97 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 112 bp overlap
ChIP MCF-7_s5942 GSE115607.ESR1.MCF-7_s5942 111 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 112 bp overlap
FOXA1 2 datasets
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 112 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 112 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 112 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 112 bp overlap
GATA3 3 datasets
ChIP Kelly GSE94822.GATA3.Kelly 112 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 112 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 96 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 112 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-N 57 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 4 datasets
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 112 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 89 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 112 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 102 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 98 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 112 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 112 bp overlap
MBD2 1 dataset
ChIP MCF-7 ENCSR940MHE.MBD2.MCF-7 86 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 109 bp overlap
NR3C1 4 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 94 bp overlap
ChIP MCF-7 GSE152203.NR3C1.MCF-7 112 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 112 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 112 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 112 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 112 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 112 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RB1 1 dataset
ChIP MCF-7_siGFP GSE98728.RB1.MCF-7_siGFP 112 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 112 bp overlap
SMARCA2 2 datasets
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 112 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCA2.SK-N-MC_shGFP 112 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 112 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 112 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 112 bp overlap
SMARCB1 5 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 112 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 112 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 112 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 112 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 112 bp overlap
SMARCC1 4 datasets
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 112 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 112 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 112 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 112 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 112 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 112 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 112 bp overlap
SOX2 3 datasets
ChIP LK2 GSE137459.SOX2.LK2 112 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 112 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 112 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT3 4 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 59 bp overlap
ChIP MCF-7 GSE152203.STAT3.MCF-7 100 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 112 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 112 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 111 bp overlap
TCF12 1 dataset
ChIP MCF-7 ENCSR000BUN.TCF12.MCF-7 112 bp overlap
TCF7L2 4 datasets
ChIP HEK293 ENCFF513JQN 112 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 112 bp overlap
ChIP MCF-7 ENCFF219LIX 112 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 112 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 53 bp overlap
TEAD4 3 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 99 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 112 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 73 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TP63 1 dataset
Motif DE_12h DE_12h-TP63_MA0525.2 18 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 55 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap