chr3 : 129,444,041 129,444,682
641 bp 67 TFs 2 linked genes
This 641 bp open chromatin element is linked to IFT122 and MBD4 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
IFT122 3.9 kb Proximal Proximity
MBD4 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,439,041 – 129,449,682
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 316 bp overlap
ChIP K562 ENCFF938UXQ 192 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 273 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 359 bp overlap
BRD4 2 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 357 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 523 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 261 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CCNT2 1 dataset
ChIP K562 ENCFF199GSZ 425 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 181 bp overlap
CEBPA 3 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 203 bp overlap
ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 167 bp overlap
ChIP liver ERP002306.CEBPA.liver 136 bp overlap
CEBPB 7 datasets
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 101 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 334 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 179 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 169 bp overlap
ChIP K562 ENCFF189VBN 194 bp overlap
ChIP K562 ENCFF584CTB 136 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 212 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 186 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR490LWA.CEBPG.K-562 327 bp overlap
CTCF 1 dataset
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 179 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 205 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 201 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 378 bp overlap
ChIP K562 ENCFF622HMZ 601 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 169 bp overlap
EP300 2 datasets
ChIP AML GSE131939.EP300.AML 115 bp overlap
ChIP K-562 ENCSR000EGE.EP300.K-562 124 bp overlap
ESR1 1 dataset
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 285 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 301 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 209 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 253 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 263 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 350 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 253 bp overlap
ChIP DE DE-FOXA2-1 641 bp overlap
ChIP DE DE-FOXA2-2 594 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 436 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 439 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 178 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 165 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 349 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 156 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 203 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 249 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 411 bp overlap
ChIP DE DE-GATA4-1 611 bp overlap
ChIP DE DE-GATA4-2 620 bp overlap
ChIP foregut GSE117136.GATA4.foregut 441 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 633 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 641 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 614 bp overlap
ChIP DE DE-GATA6-2 606 bp overlap
ChIP foregut GSE117136.GATA6.foregut 472 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 483 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 399 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 449 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 402 bp overlap
ChIP K562 ENCFF968WBH 500 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 472 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 329 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 260 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 407 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 486 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 259 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 206 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 136 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 285 bp overlap
ChIP K562 ENCFF289UFB 537 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 137 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 201 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 218 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 361 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 334 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 62 bp overlap
ChIP K-562 ENCSR000BRS.NR2F2.K-562 172 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 164 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 313 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 315 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 263 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 150 bp overlap
POLR2A 8 datasets
ChIP HL-60 ENCFF321XKE 505 bp overlap
ChIP body of pancreas ENCFF501FEC 619 bp overlap
ChIP body of pancreas ENCFF675RCN 319 bp overlap
ChIP body of pancreas ENCFF675RCN 519 bp overlap
ChIP body of pancreas ENCFF727UBE 205 bp overlap
ChIP erythroblast ENCFF498VMR 396 bp overlap
ChIP stomach ENCFF607ZPU 192 bp overlap
ChIP stomach ENCFF820WZN 247 bp overlap
RBBP5 2 datasets
ChIP K562 ENCFF070CVK 350 bp overlap
ChIP K562 ENCFF070CVK 641 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 318 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 503 bp overlap
SMARCA4 6 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 467 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 419 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 406 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 421 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 312 bp overlap
ChIP K562 ENCFF506JCB 148 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 421 bp overlap
SPI1 14 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 181 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 334 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 144 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 171 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 173 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 277 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 167 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 234 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 263 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 141 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 112 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 152 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 397 bp overlap
STAT1 1 dataset
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 125 bp overlap
TAL1 7 datasets
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 177 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 155 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 169 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 172 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 190 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 168 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 198 bp overlap
ChIP K562 ENCFF931DJY 391 bp overlap
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 178 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 172 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 174 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 90 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 545 bp overlap
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 267 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 328 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 334 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 195 bp overlap
ChIP K562 ENCFF255RZG 297 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 277 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 237 bp overlap