chr3 : 61,531,586 61,531,780
194 bp 93 TFs 0 linked genes
This 194 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:61,526,586 – 61,536,780
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 194 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 184 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 185 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 165 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 116 bp overlap
CEBPA 1 dataset
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 122 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 158 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 135 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 194 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCFF003PDY 194 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 168 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 194 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 128 bp overlap
ESR1 5 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 118 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 154 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 194 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 134 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 142 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 194 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 106 bp overlap
FOXA1 6 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF207NVJ 194 bp overlap
ChIP HepG2 ENCFF740VZW 175 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 110 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 190 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap
FOXA2 7 datasets
ChIP DE DE-FOXA2-1 194 bp overlap
ChIP DE DE-FOXA2-2 194 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF533COJ 194 bp overlap
ChIP HepG2 ENCFF894AYY 194 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 194 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 194 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 194 bp overlap
ChIP DE DE-GATA4-2 194 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 150 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 119 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 194 bp overlap
ChIP DE DE-GATA6-2 194 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 163 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 107 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 138 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 194 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 169 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 113 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 140 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 114 bp overlap
KLF5 2 datasets
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 154 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 189 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 194 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 130 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 141 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 131 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 194 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 168 bp overlap
POU5F1 1 dataset
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RAD21 2 datasets
ChIP Ishikawa ENCFF570JVV 88 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 100 bp overlap
RARA 7 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
ChIP HepG2 ENCFF582XUA 173 bp overlap
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 194 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 194 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 194 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 194 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 194 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 194 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 193 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 194 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 194 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 194 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 194 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 163 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 194 bp overlap
ChIP NPC GSE122631.SOX2.NPC 178 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 194 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 194 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 194 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 194 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 194 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 156 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 194 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 150 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 194 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 156 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 169 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 155 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 194 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 194 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 194 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 194 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 184 bp overlap
ZNF12 1 dataset
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 113 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 194 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 194 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 165 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF263 4 datasets
ChIP HEK293 ENCFF336CWQ 194 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 150 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 194 bp overlap
ChIP HepG2 ENCFF626SSV 194 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 164 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZSCAN16 2 datasets
ChIP HEK293 ENCFF533NFT 182 bp overlap
ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 131 bp overlap