chr3 : 21,647,995 – 21,648,515
520 bp 86 TFs 0 linked genes
This 520 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:21,642,995 – 21,653,515
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ARNT2 2 datasets
Motif DE_36h DE_36h-ARNT2_MA1464.2 8 bp overlap
Motif DE_60h DE_60h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
ATF4 2 datasets
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
Arnt 2 datasets
Motif DE_36h DE_36h-Arnt_MA0004.1 6 bp overlap
Motif DE_60h DE_60h-Arnt_MA0004.1 6 bp overlap
CEBPG 2 datasets
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
CLOCK 2 datasets
Motif DE_36h DE_36h-CLOCK_MA0819.3 7 bp overlap
Motif DE_60h DE_60h-CLOCK_MA0819.3 7 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 2 datasets
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dmbx1 2 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Dux 2 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 274 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 304 bp overlap
ChIP DE DE-FOXA2-2 316 bp overlap
FOXD3 2 datasets
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXH1 2 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 314 bp overlap
ChIP DE DE-GATA4-2 415 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 312 bp overlap
ChIP DE DE-GATA6-2 354 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 404 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 384 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 417 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 371 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 361 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HES1 2 datasets
Motif DE_36h DE_36h-HES1_MA1099.3 8 bp overlap
Motif DE_60h DE_60h-HES1_MA1099.3 8 bp overlap
HES2 2 datasets
Motif DE_36h DE_36h-HES2_MA0616.3 9 bp overlap
Motif DE_60h DE_60h-HES2_MA0616.3 9 bp overlap
HES5 2 datasets
Motif DE_36h DE_36h-HES5_MA0821.2 10 bp overlap
Motif DE_60h DE_60h-HES5_MA0821.2 10 bp overlap
HES6 2 datasets
Motif DE_36h DE_36h-HES6_MA1493.1 10 bp overlap
Motif DE_60h DE_60h-HES6_MA1493.1 10 bp overlap
HES7 2 datasets
Motif DE_36h DE_36h-HES7_MA0822.1 12 bp overlap
Motif DE_60h DE_60h-HES7_MA0822.1 12 bp overlap
HEY1 2 datasets
Motif DE_36h DE_36h-HEY1_MA0823.1 10 bp overlap
Motif DE_60h DE_60h-HEY1_MA0823.1 10 bp overlap
HEY2 2 datasets
Motif DE_36h DE_36h-HEY2_MA0649.2 9 bp overlap
Motif DE_60h DE_60h-HEY2_MA0649.2 9 bp overlap
HIF1A 2 datasets
Motif DE_36h DE_36h-HIF1A_MA1106.2 6 bp overlap
Motif DE_60h DE_60h-HIF1A_MA1106.2 6 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
Hoxd13 2 datasets
Motif DE_36h DE_36h-Hoxd13_MA0909.4 7 bp overlap
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
JUN 4 datasets
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 225 bp overlap
KLF1 2 datasets
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 4 datasets
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF12 2 datasets
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
KLF14 2 datasets
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF15 2 datasets
Motif DE_36h DE_36h-KLF15_MA1513.2 8 bp overlap
Motif DE_60h DE_60h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
MAX 2 datasets
Motif DE_36h DE_36h-MAX_MA0058.4 6 bp overlap
Motif DE_60h DE_60h-MAX_MA0058.4 6 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MLXIPL 2 datasets
Motif DE_36h DE_36h-MLXIPL_MA0664.2 8 bp overlap
Motif DE_60h DE_60h-MLXIPL_MA0664.2 8 bp overlap
MNT 2 datasets
Motif DE_36h DE_36h-MNT_MA0825.2 6 bp overlap
Motif DE_60h DE_60h-MNT_MA0825.2 6 bp overlap
MYC 2 datasets
Motif DE_36h DE_36h-MYC_MA0147.4 8 bp overlap
Motif DE_60h DE_60h-MYC_MA0147.4 8 bp overlap
Mlxip 2 datasets
Motif DE_36h DE_36h-Mlxip_MA0622.2 6 bp overlap
Motif DE_60h DE_60h-Mlxip_MA0622.2 6 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 279 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 242 bp overlap
NFYA 2 datasets
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NR4A1 2 datasets
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Npas2 2 datasets
Motif DE_36h DE_36h-Npas2_MA0626.2 8 bp overlap
Motif DE_60h DE_60h-Npas2_MA0626.2 8 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 307 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 237 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SATB1 1 dataset
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
SIX2 2 datasets
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 287 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 224 bp overlap
SOHLH2 2 datasets
Motif DE_36h DE_36h-SOHLH2_MA1560.2 8 bp overlap
Motif DE_60h DE_60h-SOHLH2_MA1560.2 8 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 303 bp overlap
SP3 2 datasets
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap
SP8 2 datasets
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
Motif DE_60h DE_60h-SP8_MA0747.2 11 bp overlap
STAT1 1 dataset
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 270 bp overlap
TBX2 2 datasets
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX3 2 datasets
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TCF3 2 datasets
Motif DE_36h DE_36h-TCF3_MA0522.4 7 bp overlap
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
TEAD1 1 dataset
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
ZBED4 2 datasets
Motif DE_36h DE_36h-ZBED4_MA2328.1 10 bp overlap
Motif DE_60h DE_60h-ZBED4_MA2328.1 10 bp overlap
ZBTB26 1 dataset
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
ZNF140 2 datasets
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
ZNF274 2 datasets
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF282 2 datasets
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF410 1 dataset
Motif DE_36h DE_36h-ZNF410_MA0752.2 16 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF677 2 datasets
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF701 3 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZNF740 2 datasets
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
ZNF816 2 datasets
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
ZNF85 1 dataset
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
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