chr3 : 16,697,811 – 16,698,131
320 bp 67 TFs 1 linked gene
This 320 bp open chromatin element is linked to ENSG00000229271 and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000229271 207 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:16,692,811 – 16,703,131
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 191 bp overlap
BHLHE22 1 dataset
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 75 bp overlap
BRD3 1 dataset
ChIP H-1 GSE126661.BRD3.H-1 57 bp overlap
BRD4 6 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 320 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 130 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 199 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 178 bp overlap
ChIP SGBS_TNF GSE64233.BRD4.SGBS_TNF 178 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 182 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 320 bp overlap
CEBPA 10 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 127 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 188 bp overlap
ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 142 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 174 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 224 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 226 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 167 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 161 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 132 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 189 bp overlap
CEBPB 7 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 258 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 320 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 320 bp overlap
ChIP monocyte GSE98367.CEBPB.monocyte 127 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 263 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 190 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 162 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 163 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 52 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 65 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 203 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 297 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 230 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 198 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 92 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 259 bp overlap
FLI1 2 datasets
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 79 bp overlap
ChIP NB4 GSE23730.FLI1.NB4 158 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 132 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 78 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 98 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 320 bp overlap
ChIP GM12878 ENCFF824TGK 292 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 320 bp overlap
ChIP GM12878 ENCFF918AID 301 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 127 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 123 bp overlap
IRF4 2 datasets
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 68 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 87 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 320 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 50 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 144 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 240 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 320 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 259 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 228 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 275 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 128 bp overlap
KDM1A 3 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 76 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 106 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 193 bp overlap
KMT2A 2 datasets
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 211 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 164 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 320 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 176 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 176 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 232 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 155 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 184 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 166 bp overlap
MED1 3 datasets
ChIP SGBS GSE64233.MED1.SGBS 129 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 157 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 301 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 85 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 314 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 215 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 52 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 304 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 171 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 320 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 314 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Triptolide-5min GSE118494.NCAPH2.IMR-90_Triptolide-5min 200 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 156 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 128 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 320 bp overlap
POU5F1 4 datasets
ChIP GM23338 ENCFF333SNB 286 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 292 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 194 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 220 bp overlap
PPARG 1 dataset
ChIP ASC GSE21366.PPARG.ASC 184 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 88 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 213 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 174 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 247 bp overlap
RELA 2 datasets
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 149 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.RELA.THP-1_eGFP-Pam3csk-4h 320 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 241 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 141 bp overlap
RUNX1 2 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 308 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 197 bp overlap
RXRA 1 dataset
ChIP JMSU-1_RXRA-S427F GSE107734.RXRA.JMSU-1_RXRA-S427F 164 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 215 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 147 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 128 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 156 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 98 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 320 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 313 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 303 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 289 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 95 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 296 bp overlap
SPI1 35 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 170 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 169 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 142 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 200 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 85 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 181 bp overlap
ChIP GM12878 ENCFF134LCP 104 bp overlap
ChIP GM12891 ENCFF563IUT 62 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 137 bp overlap
ChIP HL-60 ENCFF645GBT 91 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 177 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 105 bp overlap
ChIP K562 ENCFF410ORC 135 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 180 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 199 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 213 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 185 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 122 bp overlap
ChIP OCI-Ly10 GSE56857.SPI1.OCI-Ly10 113 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPI1.OCI-Ly3_SHCTR 161 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 203 bp overlap
ChIP RS4-11 GSE71616.SPI1.RS4-11 176 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 218 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 83 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 154 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 167 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 129 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 150 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 154 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 315 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 145 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 266 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 100 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 112 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 126 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 173 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 213 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 216 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 71 bp overlap
STAT3 6 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 150 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 119 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 143 bp overlap
ChIP TMD8_DMSO GSE123398.STAT3.TMD8_DMSO 173 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 307 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 89 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 51 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 188 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 174 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 194 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 160 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 129 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 204 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 238 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 320 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 64 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 78 bp overlap
ZNF232 2 datasets
ChIP WTC11 ENCFF901BGD 314 bp overlap
ChIP WTC11 ENCFF901BGD 262 bp overlap
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