chr3 : 16,659,477 16,659,742
265 bp 64 TFs 0 linked genes
This 265 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:16,654,477 – 16,664,742
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 193 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 265 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 265 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 168 bp overlap
BACH2 1 dataset
Motif ES_0h ES_0h-BACH2_MA1101.3 11 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 265 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 182 bp overlap
CTCFL 1 dataset
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 143 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 177 bp overlap
ESRRA 1 dataset
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap
EWSR1-FLI1 2 datasets
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 171 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 190 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 142 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 163 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 265 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 265 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 265 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 157 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 167 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 130 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 259 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 215 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 265 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 262 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 265 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 237 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 155 bp overlap
ChIP hESC GSE20650.NANOG.hESC 208 bp overlap
NFE2 1 dataset
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR3C1 2 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 150 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 149 bp overlap
NR5A1 1 dataset
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 153 bp overlap
POU5F1 2 datasets
ChIP GM23338 ENCFF333SNB 254 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 265 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 262 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 154 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 167 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 164 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 233 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 239 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 216 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
Six4 1 dataset
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 121 bp overlap
TEAD1 2 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 265 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 7 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 239 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCFF772OTG 247 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 172 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 265 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 265 bp overlap
TFCP2 1 dataset
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 116 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 130 bp overlap
ChIP WTC11 ENCFF699QGS 176 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 226 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 235 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF184 2 datasets
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ChIP WTC11 ENCFF352POG 265 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 265 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF8 1 dataset
Motif ES_0h ES_0h-ZNF8_MA1718.1 20 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap