chr3 : 7,731,422 – 7,732,157
735 bp 125 TFs 0 linked genes
This 735 bp open chromatin element has no linked target genes and is bound by 125 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:7,726,422 – 7,737,157
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
125 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ATOH7 1 dataset
Motif DE_24h DE_24h-ATOH7_MA1468.1 10 bp overlap
Ascl2 1 dataset
Motif DE_24h DE_24h-Ascl2_MA0816.1 10 bp overlap
BARX1 2 datasets
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
Motif DE_24h DE_24h-BARX1_MA0875.2 6 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 191 bp overlap
BSX 2 datasets
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Motif DE_24h DE_24h-BSX_MA0876.2 6 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_24h DE_24h-Bcl11B_MA1989.2 9 bp overlap
CTCF 2 datasets
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 106 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 210 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 458 bp overlap
ChIP BLaER1 ENCFF460KDD 282 bp overlap
DLX1 2 datasets
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
Motif DE_24h DE_24h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Motif DE_24h DE_24h-DLX6_MA0882.2 6 bp overlap
Dlx3 2 datasets
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Motif DE_24h DE_24h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Motif DE_24h DE_24h-Dlx4_MA0881.2 6 bp overlap
EGR4 1 dataset
Motif DE_24h DE_24h-EGR4_MA0733.2 11 bp overlap
EN2 2 datasets
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
Motif DE_24h DE_24h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
ERF::FOXO1 1 dataset
Motif DE_24h DE_24h-ERFFOXO1_MA1936.2 12 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOXD2 1 dataset
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_24h DE_24h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_24h DE_24h-FOXE1_MA1487.3 12 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_24h DE_24h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_24h DE_24h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA1::TAL1 1 dataset
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 358 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 528 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 429 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 553 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 582 bp overlap
GBX1 2 datasets
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
Motif DE_24h DE_24h-GBX1_MA0889.2 7 bp overlap
GBX2 2 datasets
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Motif DE_24h DE_24h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HESX1 2 datasets
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
Motif DE_24h DE_24h-HESX1_MA0894.2 6 bp overlap
HOXA7 2 datasets
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Motif DE_24h DE_24h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif DE_24h DE_24h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_24h DE_24h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_24h DE_24h-Hmx3_MA0898.2 9 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 395 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 3 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 3 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
LBX1 2 datasets
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
Motif DE_24h DE_24h-LBX1_MA0618.2 7 bp overlap
LBX2 2 datasets
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
Motif DE_24h DE_24h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Motif DE_24h DE_24h-LHX2_MA0700.3 6 bp overlap
LHX9 2 datasets
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
Motif DE_24h DE_24h-LHX9_MA0701.3 7 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 194 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF507HCX 470 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
MSX1 2 datasets
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
Motif DE_24h DE_24h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Motif DE_24h DE_24h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 263 bp overlap
Msx3 2 datasets
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Motif DE_24h DE_24h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 294 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
NEUROD1 1 dataset
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif DE_24h DE_24h-NEUROG2_MA0669.1 10 bp overlap
NFYA 1 dataset
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_24h DE_24h-NFYC_MA1644.2 7 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_24h DE_24h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
Neurod2 1 dataset
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Nobox 2 datasets
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Motif DE_24h DE_24h-Nobox_MA0125.2 6 bp overlap
OLIG1 1 dataset
Motif DE_24h DE_24h-OLIG1_MA0826.1 10 bp overlap
OSR2 1 dataset
Motif DE_24h DE_24h-OSR2_MA1646.2 8 bp overlap
PAX9 1 dataset
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
PBX1 1 dataset
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PKNOX1 3 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 1 dataset
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU5F1 4 datasets
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 317 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 442 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 152 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 453 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
PRRX2 2 datasets
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
Motif DE_24h DE_24h-PRRX2_MA0075.4 7 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Pparg::Rxra 1 dataset
Motif DE_24h DE_24h-PpargRxra_MA0065.3 13 bp overlap
Ptf1A 3 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 191 bp overlap
RAX 2 datasets
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
Motif DE_24h DE_24h-RAX_MA0718.2 6 bp overlap
RFX4 1 dataset
Motif DE_24h DE_24h-RFX4_MA0799.3 13 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 349 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 648 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 649 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 569 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 608 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 598 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 589 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 236 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 286 bp overlap
SOX21 2 datasets
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Stat2 1 dataset
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
Stat4 1 dataset
Motif DE_24h DE_24h-Stat4_MA0518.2 10 bp overlap
TAL1::TCF3 1 dataset
Motif DE_24h DE_24h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_24h DE_24h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_24h DE_24h-TFAP4FLI1_MA1967.2 14 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP NT2/D1 ENCFF999MII 325 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 174 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIM3 1 dataset
Motif DE_24h DE_24h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
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