chr2 : 236,166,188 236,166,513
325 bp 70 TFs 2 linked genes
This 325 bp open chromatin element is linked to GBX2-AS1 and GBX2 and is bound by 70 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
GBX2-AS1 950 bp At TSS Proximity
GBX2 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:236,161,188 – 236,171,513
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 200 bp overlap
ARID4B 1 dataset
ChIP PC-3 GSE116669.ARID4B.PC-3 131 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 325 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 204 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 195 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 183 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 165 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 180 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 325 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 51 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 257 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 104 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 325 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 150 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 118 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE148277.ESR1.MCF-7 156 bp overlap
EZH2 26 datasets
ChIP A673 ENCFF790MVL 317 bp overlap
ChIP A673 ENCFF955JRZ 313 bp overlap
ChIP GM23248 ENCFF404ZHM 253 bp overlap
ChIP GM23248 ENCFF404ZHM 93 bp overlap
ChIP GM23248 ENCFF506FWX 316 bp overlap
ChIP GM23338 ENCFF613YON 325 bp overlap
ChIP H1 ENCFF232NZA 325 bp overlap
ChIP HepG2 ENCFF912EIW 325 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 325 bp overlap
ChIP astrocyte ENCFF365JTP 293 bp overlap
ChIP astrocyte ENCFF365JTP 305 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 205 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 209 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 322 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 325 bp overlap
ChIP fibroblast of lung ENCFF479BAW 171 bp overlap
ChIP hepatocyte ENCFF118DKH 116 bp overlap
ChIP hepatocyte ENCFF552DZB 325 bp overlap
ChIP keratinocyte ENCFF070STK 57 bp overlap
ChIP keratinocyte ENCFF070STK 259 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 138 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 325 bp overlap
ChIP neural cell ENCFF610EPB 142 bp overlap
ChIP neural cell ENCFF610EPB 325 bp overlap
ChIP neural progenitor cell ENCFF018MKA 325 bp overlap
ChIP neural progenitor cell ENCFF472NFV 325 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 197 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 139 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 293 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 325 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 127 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 325 bp overlap
JARID2 2 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 137 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 130 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 325 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 325 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 178 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 264 bp overlap
ChIP H1 ENCFF914VQY 217 bp overlap
ChIP HepG2 ENCFF479OHI 129 bp overlap
ChIP HepG2 ENCFF507HCX 142 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 93 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 159 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 196 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 206 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 122 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 210 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 152 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 325 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 161 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 209 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 205 bp overlap
POLR2A 3 datasets
ChIP neural cell ENCFF604SPB 247 bp overlap
ChIP neural cell ENCFF604SPB 171 bp overlap
ChIP spleen ENCFF706IUS 325 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 166 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 325 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 164 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 58 bp overlap
PRDM15 2 datasets
ChIP WTC11 ENCFF108TMF 75 bp overlap
ChIP WTC11 ENCFF108TMF 277 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 186 bp overlap
RNF2 7 datasets
ChIP H1 ENCFF239FFS 325 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 287 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 279 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 325 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 325 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 196 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 325 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 163 bp overlap
SIN3A 1 dataset
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 159 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 96 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 325 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 147 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 257 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 288 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 315 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 296 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 212 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 205 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 243 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 320 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 194 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 151 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 216 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 175 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 325 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 303 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 208 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 125 bp overlap
SUZ12 10 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 325 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 325 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 325 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 312 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 325 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 325 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 309 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 310 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 290 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 140 bp overlap
TEAD1 1 dataset
ChIP CCLP1 GSE62272.TEAD1.CCLP1 104 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 325 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 221 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 325 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 158 bp overlap
ChIP K562 ENCFF875HLX 187 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 87 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 215 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 78 bp overlap
ZNF777 2 datasets
ChIP Hep-G2 ENCSR068ZQR.ZNF777.Hep-G2 300 bp overlap
ChIP HepG2 ENCFF362XDA 325 bp overlap