chr2 : 209,661,330 209,661,755
425 bp 82 TFs 1 linked gene
This 425 bp open chromatin element is linked to MAP2 and is bound by 82 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MAP2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:209,656,330 – 209,666,755
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 199 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 368 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 181 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 202 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 268 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 170 bp overlap
BRD4 15 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 425 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 158 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 425 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 425 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 425 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 278 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 425 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 285 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 410 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 425 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 405 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 406 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 425 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 425 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 253 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 259 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 300 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 375 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 213 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH ENCFF868MXA 351 bp overlap
CTCF 3 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 198 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 343 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 148 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 234 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 335 bp overlap
ChIP neural cell ENCFF442QNK 380 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 99 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 216 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 127 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 161 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 171 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 136 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 177 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 171 bp overlap
GTF3C2 1 dataset
ChIP T98G GSE120162.GTF3C2.T98G 299 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 299 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 350 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 173 bp overlap
Hic1 1 dataset
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 234 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 175 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 246 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 185 bp overlap
MAX 2 datasets
ChIP WA01 ENCSR000EUP.MAX.WA01 177 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 203 bp overlap
MXI1 6 datasets
ChIP SK-N-SH ENCFF746HVJ 406 bp overlap
ChIP SK-N-SH ENCFF746HVJ 310 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 425 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 425 bp overlap
ChIP neural cell ENCFF623HQN 378 bp overlap
ChIP neural cell ENCFF623HQN 310 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 405 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 423 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 409 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 326 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 371 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 425 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 389 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 425 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 425 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 194 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 409 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 170 bp overlap
MYOD1 2 datasets
ChIP RD GSE137168.MYOD1.RD 234 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 241 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 195 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 419 bp overlap
ChIP islet ERP001456.PDX1.islet 178 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 425 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF770YBQ 420 bp overlap
ChIP PFSK-1 ENCFF576NIT 425 bp overlap
ChIP neural cell ENCFF604SPB 304 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 248 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 230 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 227 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 343 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 190 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 303 bp overlap
ChIP neural cell ENCFF564MOT 425 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 338 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 243 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 258 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 161 bp overlap
ChIP neural ENCSR000BTV.REST.neural 425 bp overlap
ChIP neural cell ENCFF882LXX 425 bp overlap
RFX1 8 datasets
Motif ES_0h ES_0h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 160 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 305 bp overlap
ChIP K562 ENCFF421AVO 337 bp overlap
ChIP MCF-7 ENCFF782EZS 322 bp overlap
ChIP MCF-7 ENCFF973QAD 215 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 323 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 283 bp overlap
RFX2 1 dataset
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 143 bp overlap
RFX5 3 datasets
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
ChIP SK-N-SH ENCFF755HLO 281 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 192 bp overlap
Rfx6 1 dataset
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 232 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 265 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 97 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 131 bp overlap
SMARCA4 8 datasets
ChIP NGP GSE134626.SMARCA4.NGP 77 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 260 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 177 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 376 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 425 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 274 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 425 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 413 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 327 bp overlap
ChIP neural cell ENCFF795YGY 424 bp overlap
SNAI2 1 dataset
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 214 bp overlap
SOX12 1 dataset
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif ES_0h ES_0h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 425 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 384 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 240 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 126 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SOX8 3 datasets
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
ChIP RH4 GSE116344.SOX8.RH4 220 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 194 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 259 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 90 bp overlap
SRY 1 dataset
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
TAF1 7 datasets
ChIP H1 ENCFF478SZO 388 bp overlap
ChIP PFSK-1 ENCFF982LZL 260 bp overlap
ChIP PFSK-1 ENCFF982LZL 397 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 177 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 264 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 298 bp overlap
ChIP neural cell ENCFF468SPD 405 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 238 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 270 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 221 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 266 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 266 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 281 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 129 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 382 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 328 bp overlap