chr2 : 176,085,189 176,085,595
406 bp 68 TFs 1 linked gene
This 406 bp open chromatin element is linked to HOXD13 and is bound by 68 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HOXD13 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:176,080,189 – 176,090,595
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 176 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 151 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 203 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 188 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 406 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 263 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 92 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 406 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 406 bp overlap
CBX2 2 datasets
ChIP HepG2 ENCFF838BNI 195 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 406 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 406 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 339 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 406 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 286 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 68 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 347 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 138 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 113 bp overlap
ChIP H1 ENCFF329MAX 314 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 210 bp overlap
CTCF 7 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 329 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 81 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 382 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 105 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 146 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 210 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 86 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 375 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 178 bp overlap
EZH1 1 dataset
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 324 bp overlap
EZH2 31 datasets
ChIP GM23338 ENCFF613YON 406 bp overlap
ChIP GM23338 ENCFF886DXX 177 bp overlap
ChIP GM23338 ENCFF886DXX 263 bp overlap
ChIP H1 ENCFF232NZA 406 bp overlap
ChIP HepG2 ENCFF912EIW 154 bp overlap
ChIP HepG2 ENCFF912EIW 198 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 191 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 362 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 368 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 130 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 169 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 406 bp overlap
ChIP astrocyte ENCFF365JTP 406 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 406 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 406 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 406 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 406 bp overlap
ChIP fibroblast of lung ENCFF479BAW 321 bp overlap
ChIP hepatocyte ENCFF118DKH 66 bp overlap
ChIP hepatocyte ENCFF552DZB 196 bp overlap
ChIP hepatocyte ENCFF552DZB 230 bp overlap
ChIP hepatocyte ENCFF552DZB 297 bp overlap
ChIP keratinocyte ENCFF070STK 272 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 251 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 158 bp overlap
ChIP myotube ENCFF857GWB 370 bp overlap
ChIP neural cell ENCFF610EPB 216 bp overlap
ChIP neural cell ENCFF610EPB 354 bp overlap
ChIP neural progenitor cell ENCFF018MKA 406 bp overlap
ChIP neural progenitor cell ENCFF472NFV 406 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 361 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 337 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 160 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 128 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 268 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 214 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 116 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 406 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 109 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 406 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 54 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 164 bp overlap
KDM5B 2 datasets
ChIP MCF-7 GSE46055.KDM5B.MCF-7 110 bp overlap
ChIP MCF-7 GSE46055.KDM5B.MCF-7 159 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 149 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 316 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 231 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 297 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 343 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 232 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 406 bp overlap
OGG1 2 datasets
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 284 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 274 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 173 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 98 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 334 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 406 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 406 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 406 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 187 bp overlap
RAD21 1 dataset
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 189 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 406 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 297 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 406 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 71 bp overlap
ChIP K562 ENCFF061ATI 92 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 406 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 159 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 147 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 131 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 262 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 397 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 173 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 385 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 261 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 248 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 127 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 92 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 162 bp overlap
SS18-SSX 3 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 116 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 150 bp overlap
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 107 bp overlap
SUZ12 12 datasets
ChIP H1 ENCFF507HGF 81 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 406 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 196 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 372 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 406 bp overlap
ChIP NT2/D1 ENCFF574SXS 187 bp overlap
ChIP NT2/D1 ENCFF574SXS 260 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 406 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 175 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 175 bp overlap
ChIP hMSC GSE125166.SUZ12.hMSC 267 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 150 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 220 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 312 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 210 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 146 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 253 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 228 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 136 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 115 bp overlap
ZNF611 1 dataset
ChIP HEK293T GSE78099.ZNF611.HEK293T 212 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 106 bp overlap