chr2 : 34,734,626 – 34,735,331

705 bp 90 TFs 1 linked gene

This 705 bp open chromatin element is linked to LINC01320 and is bound by 90 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01320		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

90 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 289 bp overlap

ATF7 1 dataset

ChIP GM12878 ENCSR014YCR.ATF7.GM12878 333 bp overlap

Atf3 1 dataset

Motif ES_0h ES_0h-Atf3_MA1988.2 7 bp overlap

BACH1 1 dataset

Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap

BACH2 1 dataset

Motif ES_0h ES_0h-BACH2_MA1101.3 11 bp overlap

BATF 1 dataset

Motif ES_0h ES_0h-BATF_MA1634.2 7 bp overlap

BATF3 1 dataset

Motif ES_0h ES_0h-BATF3_MA0835.3 7 bp overlap

BATF::JUN 1 dataset

Motif ES_0h ES_0h-BATFJUN_MA0462.3 7 bp overlap

BCL6B 1 dataset

Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap

BCOR 1 dataset

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 234 bp overlap

BNC2 1 dataset

Motif ES_0h ES_0h-BNC2_MA1928.2 7 bp overlap

CEBPA 1 dataset

Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 597 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 345 bp overlap

E2F8 1 dataset

ChIP GM12878 ENCSR793HVL.E2F8.GM12878 236 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 396 bp overlap

FIGLA 1 dataset

Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap

FLI1::DRGX 1 dataset

Motif ES_0h ES_0h-FLI1DRGX_MA1949.2 14 bp overlap

FOS 1 dataset

Motif ES_0h ES_0h-FOS_MA0476.2 8 bp overlap

FOS::JUN 1 dataset

Motif ES_0h ES_0h-FOSJUN_MA0099.4 9 bp overlap

FOS::JUNB 1 dataset

Motif ES_0h ES_0h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 1 dataset

Motif ES_0h ES_0h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 1 dataset

Motif ES_0h ES_0h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1 1 dataset

Motif ES_0h ES_0h-FOSL1_MA0477.3 9 bp overlap

FOSL1::JUN 1 dataset

Motif ES_0h ES_0h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 1 dataset

Motif ES_0h ES_0h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL1::JUND 1 dataset

Motif ES_0h ES_0h-FOSL1JUND_MA1142.2 8 bp overlap

FOSL2 1 dataset

Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap

FOSL2::JUN 1 dataset

Motif ES_0h ES_0h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 1 dataset

Motif ES_0h ES_0h-FOSL2JUNB_MA1138.2 9 bp overlap

FOSL2::JUND 1 dataset

Motif ES_0h ES_0h-FOSL2JUND_MA1144.2 9 bp overlap

FOXD2 1 dataset

Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 170 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 497 bp overlap

GATA6 1 dataset

ChIP DE DE-GATA6-2 312 bp overlap

HOXA3 1 dataset

Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap

HOXA4 1 dataset

Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap

HOXB4 1 dataset

Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap

HSF1 1 dataset

ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 326 bp overlap

IRF2 1 dataset

Motif ES_0h ES_0h-IRF2_MA0051.2 16 bp overlap

IRF7 1 dataset

Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap

IRF8 1 dataset

Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap

Irf1 1 dataset

Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap

JDP2 1 dataset

Motif ES_0h ES_0h-JDP2_MA0655.1 9 bp overlap

JUN 8 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 326 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 471 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 298 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 497 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 486 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 487 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 409 bp overlap

ChIP WA01 ENCSR000ECA.JUN.WA01 163 bp overlap

JUN::JUNB 1 dataset

Motif ES_0h ES_0h-JUNJUNB_MA1132.2 8 bp overlap

JUNB 1 dataset

Motif ES_0h ES_0h-JUNB_MA0490.3 9 bp overlap

JUND 2 datasets

Motif ES_0h ES_0h-JUND_MA0491.3 9 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 143 bp overlap

Jun 1 dataset

Motif ES_0h ES_0h-Jun_MA0489.3 8 bp overlap

KLF4 1 dataset

ChIP WA09 GSE105028.KLF4.WA09 440 bp overlap

LIN54 1 dataset

Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap

MAF::NFE2 1 dataset

Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAFK 1 dataset

Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap

MED1 1 dataset

ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 369 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 199 bp overlap

Mafg 1 dataset

Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 135 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 487 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 674 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 542 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 221 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 705 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 705 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 569 bp overlap

ChIP hESC GSE20650.NANOG.hESC 539 bp overlap

ChIP hESC GSE18292.NANOG.hESC 317 bp overlap

NFE2 1 dataset

Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap

NFIA 1 dataset

Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap

NFKB2 1 dataset

Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap

NIPBL 1 dataset

ChIP WA09 GSE105028.NIPBL.WA09 401 bp overlap

NKX6-3 1 dataset

Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap

POU5F1 10 datasets

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 641 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 340 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 169 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 483 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 358 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 299 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 404 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 605 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 369 bp overlap

PRDM14 1 dataset

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 209 bp overlap

RELA 1 dataset

ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.RELA.HeLa-B2_GRKD_TA_TNFA 112 bp overlap

RELB 1 dataset

ChIP GM12878 ENCSR387QUV.RELB.GM12878 306 bp overlap

RORA 1 dataset

Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap

Rhox11 1 dataset

Motif ES_0h ES_0h-Rhox11_MA0629.2 9 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 482 bp overlap

SMARCA4 5 datasets

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 53 bp overlap

ChIP WA09 GSE105028.SMARCA4.WA09 456 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 240 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 575 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 698 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 310 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 619 bp overlap

SMARCC1 3 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 360 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 260 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 564 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 221 bp overlap

SOX2 3 datasets

ChIP H9 GSE46837.SOX2.H9 265 bp overlap

ChIP hESC GSE18292.SOX2.hESC 178 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 458 bp overlap

SOX21 1 dataset

ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 406 bp overlap

Stat5a::Stat5b 2 datasets

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 279 bp overlap

TBX19 1 dataset

Motif ES_0h ES_0h-TBX19_MA0804.2 17 bp overlap

TBX21 1 dataset

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 309 bp overlap

TEAD1 2 datasets

ChIP WTC11 ENCFF502QUV 405 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 463 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 520 bp overlap

TP53 2 datasets

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 286 bp overlap

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 277 bp overlap

ZEB1 1 dataset

Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 381 bp overlap

ZNF24 1 dataset

ChIP GM12878 ENCFF688STO 300 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 481 bp overlap