chr20 : 51,889,435 51,889,760
325 bp 78 TFs 0 linked genes
This 325 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:51,884,435 – 51,894,760
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa GSE40632.AFF4.HeLa 200 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 222 bp overlap
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 192 bp overlap
ChIP VCaP GSE148358.AR.VCaP 151 bp overlap
ARID2 3 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 307 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 295 bp overlap
BRD4 1 dataset
ChIP HEK293T GSE51633.BRD4.HEK293T 85 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 325 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 76 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 325 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 186 bp overlap
CTCF 9 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 221 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 153 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 153 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 307 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 191 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 232 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 231 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 148 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 217 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 325 bp overlap
DPF2 6 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 201 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 161 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 246 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 325 bp overlap
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 264 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 325 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 182 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 225 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 222 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 276 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 289 bp overlap
FOXA1 1 dataset
ChIP MCF-7 GSE81714.FOXA1.MCF-7 270 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 325 bp overlap
ChIP DE DE-FOXA2-2 325 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 141 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 144 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 213 bp overlap
GATA3 13 datasets
ChIP MCF-7 ENCFF178GBS 325 bp overlap
ChIP MCF-7 ENCFF352QVM 287 bp overlap
ChIP MCF-7 ENCFF352QVM 238 bp overlap
ChIP MCF-7 ENCFF437NQS 287 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 229 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 288 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 269 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 325 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 147 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 263 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 119 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 235 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 303 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 173 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 247 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 325 bp overlap
ChIP DE DE-GATA4-2 325 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 232 bp overlap
ChIP foregut GSE117136.GATA4.foregut 325 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 325 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 301 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 316 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 129 bp overlap
ChIP DE DE-GATA6-1 325 bp overlap
ChIP DE DE-GATA6-2 325 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 325 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 325 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 325 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 325 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 325 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 215 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 325 bp overlap
ChIP foregut GSE117136.GATA6.foregut 276 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 325 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 325 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 291 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 325 bp overlap
ChIP H1 ENCFF939VKA 202 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 201 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 244 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 273 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 321 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 232 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 166 bp overlap
KMT2C 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 293 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 246 bp overlap
KMT2D 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 315 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 236 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 309 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 197 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 300 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 325 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 302 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 265 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 325 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 325 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 248 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 325 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 325 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 325 bp overlap
ChIP hESC GSE20650.NANOG.hESC 306 bp overlap
ChIP hESC GSE18292.NANOG.hESC 126 bp overlap
NCOA1 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 155 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 325 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 325 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 206 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 227 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 115 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 325 bp overlap
ChIP GM23338 ENCFF333SNB 289 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 325 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 325 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 325 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 280 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 325 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 325 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 318 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 325 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 321 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 186 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 260 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 209 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 323 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 187 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 181 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 79 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 325 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 325 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 325 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 325 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 325 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 325 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 325 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 325 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE36578.SMAD3.BG03 70 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 205 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 180 bp overlap
SMARCA4 11 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 258 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 224 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 317 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 309 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 233 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 79 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 146 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 325 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 301 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 325 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 229 bp overlap
SMARCB1 3 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 325 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 248 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 308 bp overlap
SMARCC1 12 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 220 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 299 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 321 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 304 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 324 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 325 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 299 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 300 bp overlap
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 301 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 202 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 267 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 223 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 314 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 325 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 313 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 296 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 325 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 253 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 285 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 325 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 103 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 289 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 129 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 96 bp overlap
TEAD1 2 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 135 bp overlap
ChIP WTC11 ENCFF502QUV 325 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 217 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 311 bp overlap
TRPS1 3 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 180 bp overlap
ChIP T-47D GSE114213.TRPS1.T-47D 296 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 158 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 242 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 145 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 215 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 239 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 325 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 157 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 183 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 225 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 175 bp overlap