chr20:38,612,897–38,613,663

chr20 : 38,612,897 – 38,613,663

766 bp 78 TFs 6 linked genes

This 766 bp open chromatin element is linked to 6 target genes and is bound by 78 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ARHGAP40		11.3 kb	Distal	Multiome
ACTR5		135.3 kb	Distal	Multiome
RALGAPB		140.3 kb	Distal	Multiome
SNHG11		166.4 kb	Distal	Multiome
SNHG17		177.8 kb	Distal	Multiome
PPP1R16B		192.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

78 transcription factors

ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 88 bp overlap

ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 75 bp overlap

ChIP K-562 ENCSR028UIU.ATF3.K-562 225 bp overlap

ATF4 3 datasets

ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 182 bp overlap

ChIP K-562 ENCSR145TSJ.ATF4.K-562 417 bp overlap

ChIP K562 ENCFF674KTF 318 bp overlap

Atoh1 1 dataset

Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap

ChIP H-1_DE GSE126661.BRD3.H-1_DE 301 bp overlap

ChIP K-562 ENCSR000ATU.CBX2.K-562 366 bp overlap

CEBPA 2 datasets

ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 120 bp overlap

ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 244 bp overlap

CEBPB 8 datasets

ChIP A549 ENCFF235AIY 257 bp overlap

ChIP HeLa-S3 ENCFF722WEG 85 bp overlap

ChIP HepG2 ENCFF536NTI 221 bp overlap

ChIP K-562 ENCSR000EHE.CEBPB.K-562 203 bp overlap

ChIP K-562 ENCSR000BRQ.CEBPB.K-562 118 bp overlap

ChIP K562 ENCFF189VBN 271 bp overlap

ChIP MCF-7 ENCFF772ZTQ 277 bp overlap

ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 240 bp overlap

CTCF 8 datasets

ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap

ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 98 bp overlap

ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 114 bp overlap

ChIP MCF-7 ENCFF414SZG 170 bp overlap

ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 126 bp overlap

ChIP astrocyte ENCFF558APA 189 bp overlap

ChIP astrocyte ENCFF558APA 396 bp overlap

ChIP endodermal cell ENCFF471YCZ 282 bp overlap

Cebpa 4 datasets

ChIP BLaER1 ENCFF093OYK 456 bp overlap

ChIP BLaER1 ENCFF262VBH 416 bp overlap

ChIP BLaER1 ENCFF274GAT 312 bp overlap

ChIP BLaER1 ENCFF460KDD 256 bp overlap

EOMES 2 datasets

Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap

ChIP hESC GSE26097.EOMES.hESC 542 bp overlap

EP300 2 datasets

ChIP HeLa-S3 ENCFF245KNK 361 bp overlap

ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 228 bp overlap

ESR1 6 datasets

ChIP MCF-7 GSE103023.ESR1.MCF-7 186 bp overlap

ChIP MCF-7 GSE48930.ESR1.MCF-7 171 bp overlap

ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 213 bp overlap

ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 266 bp overlap

ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 217 bp overlap

ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 252 bp overlap

ESR1_Y537N 1 dataset

ChIP MCF-7_talen GSE94493.ESR1_Y537N.MCF-7_talen 182 bp overlap

ESR1_Y537S 1 dataset

ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 193 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 381 bp overlap

ChIP DE DE-FOXA2-2 333 bp overlap

GATA2 4 datasets

ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 150 bp overlap

ChIP LNCaP GSE38391.GATA2.LNCaP 66 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 66 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 90 bp overlap

GATA3 6 datasets

ChIP MCF-7 GSE122847.GATA3.MCF-7 447 bp overlap

ChIP MCF-7 GSE133072.GATA3.MCF-7 301 bp overlap

ChIP MCF-7 GSE51274.GATA3.MCF-7 256 bp overlap

ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 292 bp overlap

ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 278 bp overlap

ChIP T-47D ENCSR000BMX.GATA3.T-47D 178 bp overlap

GATA3_Nter 2 datasets

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 197 bp overlap

ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 187 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 617 bp overlap

ChIP DE DE-GATA4-2 636 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 619 bp overlap

ChIP DE DE-GATA6-2 677 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 453 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 464 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 440 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 533 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 625 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 490 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 629 bp overlap

GRHL2 1 dataset

ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 69 bp overlap

HAND2 1 dataset

Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap

ChIP HepG2 ENCFF854JLR 245 bp overlap

HOXC13 1 dataset

Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 449 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 491 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 362 bp overlap

LIN54 1 dataset

Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap

MEF2A 1 dataset

Motif DE_36h DE_36h-MEF2A_MA0052.5 10 bp overlap

MEF2C 1 dataset

Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap

MEIS1 1 dataset

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap

MGA::EVX1 1 dataset

Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap

ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap

NCAPH2 2 datasets

ChIP RMG-I GSE120058.NCAPH2.RMG-I 180 bp overlap

ChIP RMG-I GSE120058.NCAPH2.RMG-I 121 bp overlap

NELFE 1 dataset

ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap

NEUROD1 1 dataset

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 196 bp overlap

NEUROG2 1 dataset

Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap

NR3C1 1 dataset

ChIP T-47D GSE126859.NR3C1.T-47D 248 bp overlap

ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 197 bp overlap

PKNOX1 1 dataset

Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 58 bp overlap

PTBP1 1 dataset

ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 152 bp overlap

Prdm4 1 dataset

Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap

Prdm5 1 dataset

Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap

ChIP 786-O GSE86092.RELA.786-O 166 bp overlap

RREB1 1 dataset

Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 506 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 408 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 286 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 561 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 505 bp overlap

SMARCA4 2 datasets

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 343 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 326 bp overlap

SOX13 1 dataset

Motif DE_36h DE_36h-SOX13_MA1120.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 314 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 766 bp overlap

Motif DE_36h DE_36h-SOX2_MA0143.5 7 bp overlap

STAG1 1 dataset

ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 111 bp overlap

Motif DE_36h DE_36h-Sox3_MA0514.3 7 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 389 bp overlap

Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap

Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap

Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap

TBX21 1 dataset

Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap

Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap

Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap

Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap

Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap

VEZF1 1 dataset

Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap

ZBTB17 1 dataset

Motif DE_36h DE_36h-ZBTB17_MA2102.1 8 bp overlap

ZBTB7A 1 dataset

ChIP K-562 GSE103445.ZBTB7A.K-562 257 bp overlap

ZNF143 3 datasets

Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap

ChIP MCF-7 GSE76454.ZNF143.MCF-7 310 bp overlap

ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 310 bp overlap

ChIP HEK293T GSE78099.ZNF2.HEK293T 179 bp overlap

ZNF24 3 datasets

ChIP K-562 ENCSR695EQB.ZNF24.K-562 82 bp overlap

ChIP MCF-7 ENCFF861XIL 171 bp overlap

ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 149 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap

ZNF512 1 dataset

ChIP K562 ENCFF601EMZ 223 bp overlap

ZNF75A 1 dataset

Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap

ZNF75D 1 dataset

Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap