Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SNHG17. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SNHG17 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SNHG17, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr20:38,165,098–38,165,562 | 270.0 kb | Distal (>10kb) Multiome | 707 | |
| chr20:38,260,290–38,261,046 | 174.7 kb | Distal (>10kb) Multiome | 161 | |
| chr20:38,434,868–38,435,524 | 35 bp | At TSS Multiome | 1105 | |
| chr20:38,446,498–38,447,092 | 11.3 kb | Distal (>10kb) Multiome | 1046 | |
| chr20:38,472,312–38,473,463 | 37.4 kb | Distal (>10kb) Multiome | 898 | |
| chr20:38,607,297–38,607,885 | 172.2 kb | Distal (>10kb) Multiome | 125 | |
| chr20:38,612,897–38,613,663 | 177.8 kb | Distal (>10kb) Multiome | 78 | |
| chr20:38,646,005–38,646,460 | 210.9 kb | Distal (>10kb) Multiome | 567 | |
| chr20:38,673,746–38,675,067 | 239.1 kb | Distal (>10kb) Multiome | 446 | |
| chr20:38,725,938–38,726,412 | 290.7 kb | Distal (>10kb) Multiome | 218 | |
| chr20:38,727,220–38,727,813 | 292.1 kb | Distal (>10kb) Multiome | 231 | |
| chr20:38,730,955–38,731,938 | 296.0 kb | Distal (>10kb) Multiome | 646 |
Genomic view of the SNHG17 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.