chr18 : 40,019,647 – 40,020,415
768 bp 106 TFs 0 linked genes
This 768 bp open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:40,014,647 – 40,025,415
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 135 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD2 1 dataset
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 173 bp overlap
BRD4 5 datasets
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 274 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 465 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 383 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 220 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 484 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 597 bp overlap
CTCF 56 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 209 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 270 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 182 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 182 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 174 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 123 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 144 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 118 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 107 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 218 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 123 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 400 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 294 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 141 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 460 bp overlap
ChIP RWPE2 ENCFF911IEE 598 bp overlap
ChIP RWPE2 ENCFF911IEE 394 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 137 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 155 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 391 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 461 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 428 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 490 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 455 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 524 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 488 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 471 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF896AZK 461 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 582 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 178 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 153 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 265 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 187 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 201 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 194 bp overlap
ChIP islet ERP004003.CTCF.islet 292 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 474 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 211 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 266 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 164 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 265 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 218 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 175 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 384 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
CUX2 1 dataset
Motif DE_12h DE_12h-CUX2_MA0755.2 9 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 204 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 308 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 120 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 400 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 462 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 534 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 540 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 336 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 308 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 641 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 379 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 605 bp overlap
ChIP hESC GSE18292.NANOG.hESC 177 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 193 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 214 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 8 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 469 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 258 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 185 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 226 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 247 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 526 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 230 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 246 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 323 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 210 bp overlap
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 123 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 220 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 216 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 156 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RFX7 1 dataset
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 267 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 170 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 414 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 455 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 547 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 247 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 495 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 352 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 274 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 100 bp overlap
STAG1 4 datasets
ChIP HCAEC GSE101921.STAG1.HCAEC 176 bp overlap
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 188 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 246 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 246 bp overlap
STAG2 2 datasets
ChIP HCAEC GSE101921.STAG2.HCAEC 137 bp overlap
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 183 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 768 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 457 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 261 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 165 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 296 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 225 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 256 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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