chr18 : 7,809,120 7,810,232
1,112 bp 98 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to PTPRM and is bound by 98 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PTPRM 242.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:7,804,120 – 7,815,232
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
Arid3a 3 datasets
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 242 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 623 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 140 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 222 bp overlap
CTCF 40 datasets
ChIP 22Rv1 ENCFF466OXN 461 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 205 bp overlap
ChIP BE2C ENCFF757SRF 258 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 212 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 116 bp overlap
ChIP GM23338 ENCFF772DML 174 bp overlap
ChIP H1 ENCFF414GZI 196 bp overlap
ChIP H1 ENCFF764RHO 236 bp overlap
ChIP H9 ENCFF152GTF 210 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 148 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 159 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 260 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 122 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 134 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 107 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 99 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 142 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 89 bp overlap
ChIP K562 ENCFF082GOI 178 bp overlap
ChIP K562 ENCFF400DFR 204 bp overlap
ChIP K562 ENCFF598YSU 221 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 156 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 200 bp overlap
ChIP MCF-7 ENCFF139NQI 213 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 153 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 124 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 132 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 125 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 101 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 110 bp overlap
ChIP endodermal cell ENCFF471YCZ 247 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 300 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 166 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 157 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 124 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 183 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 187 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 181 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 177 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DMRTA2 1 dataset
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
Dmbx1 2 datasets
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EGR1 1 dataset
Motif DE_72h DE_72h-EGR1_MA0162.5 10 bp overlap
ELF1 1 dataset
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_72h DE_72h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 292 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 334 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 131 bp overlap
ETV1 1 dataset
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
Erg 1 dataset
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FOXA1 1 dataset
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 728 bp overlap
ChIP DE DE-FOXA2-2 598 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXF2 1 dataset
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GABPA 1 dataset
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 811 bp overlap
ChIP DE DE-GATA4-2 768 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 602 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 269 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 587 bp overlap
ChIP DE DE-GATA6-2 768 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 400 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 548 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 435 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 479 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 688 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 448 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 671 bp overlap
ChIP foregut GSE117136.GATA6.foregut 440 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 275 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HOXC13 1 dataset
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
Irf1 2 datasets
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
KLF11 1 dataset
Motif DE_72h DE_72h-KLF11_MA1512.2 10 bp overlap
KLF17 2 datasets
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
Motif DE_72h DE_72h-KLF17_MA1514.2 14 bp overlap
KLF6 1 dataset
Motif DE_72h DE_72h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 117 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF044PYR 437 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 206 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 203 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 93 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 313 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 226 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 212 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 694 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 361 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 358 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 548 bp overlap
SP5 4 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 169 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 193 bp overlap
TBX5 8 datasets
ChIP G296S GSE85628.TBX5.G296S 51 bp overlap
ChIP G296S GSE85628.TBX5.G296S 590 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 51 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 590 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 258 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 143 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 309 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 143 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 221 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 473 bp overlap
ZBTB7A 1 dataset
Motif DE_72h DE_72h-ZBTB7A_MA0750.3 9 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 109 bp overlap
ZNF175 1 dataset
Motif DE_72h DE_72h-ZNF175_MA2332.1 9 bp overlap
ZNF189 2 datasets
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF24 2 datasets
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF257 2 datasets
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF263 2 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF354A 2 datasets
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 202 bp overlap
ZNF675 2 datasets
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap
ZNF768 1 dataset
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap