chr16 : 26,991,912 26,993,386
1,474 bp 93 TFs 1 linked gene
This 1.5 kb open chromatin element is linked to NSMCE1 and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NSMCE1 276.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:26,986,912 – 26,998,386
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 197 bp overlap
ARID1B 1 dataset
ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 318 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 513 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BRD4 2 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 568 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 547 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 231 bp overlap
CEBPD 1 dataset
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CRX 6 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 273 bp overlap
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 396 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 329 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 334 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 327 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 494 bp overlap
CTCF 7 datasets
ChIP WA01 ENCSR000DLK.CTCF.WA01 131 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 184 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 307 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 226 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 395 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 365 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 189 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 249 bp overlap
ESR2 2 datasets
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
EZH2 9 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 618 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 88 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 1289 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 311 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 95 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 238 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 608 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 494 bp overlap
ChIP neural progenitor cell ENCFF018MKA 400 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1168 bp overlap
ChIP DE DE-FOXA2-2 1234 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA1::TAL1 2 datasets
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA3 1 dataset
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 206 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 1231 bp overlap
ChIP DE DE-GATA4-2 1408 bp overlap
ChIP foregut GSE117136.GATA4.foregut 1085 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 1146 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 225 bp overlap
GATA6 13 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 108 bp overlap
ChIP DE DE-GATA6-1 1437 bp overlap
ChIP DE DE-GATA6-2 1474 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1147 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 689 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 370 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1383 bp overlap
ChIP foregut GSE117136.GATA6.foregut 1275 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 413 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 837 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 363 bp overlap
GLI3 1 dataset
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
GLIS2 1 dataset
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
KDM1A 5 datasets
ChIP H1 ENCFF696SGD 505 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 382 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 415 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 275 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 309 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 198 bp overlap
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 158 bp overlap
LIN54 1 dataset
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MAZ 1 dataset
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MEF2D 5 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 248 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 242 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 350 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 229 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 284 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MXI1 2 datasets
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROD1 7 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 295 bp overlap
ChIP D283-Med GSE92582.NEUROD1.D283-Med 461 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 337 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 439 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 245 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 265 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 290 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 348 bp overlap
ONECUT3 1 dataset
Motif DE_72h DE_72h-ONECUT3_MA0757.2 12 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 322 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 407 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 373 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 141 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBM25 2 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 330 bp overlap
ChIP K562 ENCFF957ORK 361 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 231 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 419 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 269 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1189 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 321 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 472 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 256 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 1 dataset
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 296 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 389 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1125 bp overlap
SP5 3 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 219 bp overlap
TFEB 2 datasets
Motif DE_60h DE_60h-TFEB_MA0692.2 8 bp overlap
Motif DE_72h DE_72h-TFEB_MA0692.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
Wt1 3 datasets
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 161 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 161 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZFX 1 dataset
ChIP MCF-7 ENCFF009NAJ 626 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 248 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 182 bp overlap
ZNF140 1 dataset
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF263 2 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF410 2 datasets
Motif DE_60h DE_60h-ZNF410_MA0752.2 16 bp overlap
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 271 bp overlap
ChIP HepG2 ENCFF490FFQ 371 bp overlap
ZNF675 2 datasets
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap
ZNF75D 1 dataset
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap