chr15 : 92,914,106 – 92,914,438
332 bp 89 TFs 1 linked gene
This 332 bp open chromatin element is linked to MIR3175 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MIR3175 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:92,909,106 – 92,919,438
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 64 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 249 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 332 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 294 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 242 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 193 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 196 bp overlap
BRD4 5 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 125 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 226 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 332 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 110 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 246 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 52 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 332 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 259 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 235 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 123 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 138 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 118 bp overlap
ESR1 2 datasets
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 307 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 282 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 84 bp overlap
FOXA1 8 datasets
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 230 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 227 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 287 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 185 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 253 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 131 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 234 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 301 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 332 bp overlap
ChIP DE DE-FOXA2-2 332 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 154 bp overlap
GATA3 1 dataset
ChIP T-47D GSE51274.GATA3.T-47D 119 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 332 bp overlap
ChIP DE DE-GATA4-2 332 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 332 bp overlap
ChIP DE DE-GATA6-2 332 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 254 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 332 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 332 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 250 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 90 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 262 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 56 bp overlap
JUN 2 datasets
ChIP HUES-8 GSE109524.JUN.HUES-8 257 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 277 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 161 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 172 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 249 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 332 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 220 bp overlap
LEF1 1 dataset
ChIP hESC GSE64758.LEF1.hESC 246 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MED1 3 datasets
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 332 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 57 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 177 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 211 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 332 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 315 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 61 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 260 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 332 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 332 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 240 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 332 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 332 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 332 bp overlap
ChIP hESC GSE18292.NANOG.hESC 311 bp overlap
ChIP hESC GSE20650.NANOG.hESC 317 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 147 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 186 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 266 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 219 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 202 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 278 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 312 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 332 bp overlap
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 332 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 170 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 332 bp overlap
ChIP HCT116 ENCFF508RDJ 78 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 11 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 154 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 240 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 332 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 305 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 332 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 268 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 219 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 332 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 332 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 314 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 263 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 332 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 309 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 166 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 237 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 209 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 254 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 332 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 332 bp overlap
RFX1 1 dataset
ChIP K562 ENCFF421AVO 212 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 332 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 150 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 144 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 234 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 289 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 317 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 332 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 269 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 332 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 260 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 329 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 248 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 232 bp overlap
SMARCA4 13 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 60 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 87 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 317 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 184 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 101 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 251 bp overlap
ChIP A-549_AG15690 GSE132290.SMARCA4.A-549_AG15690 274 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 275 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 120 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 173 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 332 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 288 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 332 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 242 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 316 bp overlap
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 154 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 332 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 273 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 306 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 217 bp overlap
ChIP hESC GSE18292.SOX2.hESC 271 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 332 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 269 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 332 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 212 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 283 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 282 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 231 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 244 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 291 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 332 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 285 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 288 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 115 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 232 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 211 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 317 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 70 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 196 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 77 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 130 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 69 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 77 bp overlap
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