chr15 : 59,814,354 – 59,814,841
487 bp 75 TFs 3 linked genes
This 487 bp open chromatin element is linked to ENSG00000286495, BNIP2, and GTF2A2 and is bound by 75 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000286495 at TSS At TSS Proximity
BNIP2 125.3 kb Distal Multiome
GTF2A2 157.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:59,809,354 – 59,819,841
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 155 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 210 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 402 bp overlap
BCL11B 2 datasets
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 469 bp overlap
ChIP thymus_CD34pos GSE84677.BCL11B.thymus_CD34pos 235 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 270 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 487 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 487 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 301 bp overlap
ChIP K562 ENCFF673OEZ 168 bp overlap
CDK7 4 datasets
ChIP Jurkat GSE50622.CDK7.Jurkat 487 bp overlap
ChIP Jurkat GSE83777.CDK7.Jurkat 464 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 368 bp overlap
ChIP Jurkat_THZ2102 GSE60027.CDK7.Jurkat_THZ2102 351 bp overlap
CDK9 1 dataset
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 487 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 114 bp overlap
DMRT3 1 dataset
Motif DE_72h DE_72h-DMRT3_MA0610.2 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 223 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 443 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 224 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 378 bp overlap
ETS1 4 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 487 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 487 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 399 bp overlap
ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 373 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 5 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 487 bp overlap
ChIP Jurkat GSE147198.EZH2.Jurkat 151 bp overlap
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 416 bp overlap
ChIP T98G GSE112240.EZH2.T98G 275 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 487 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 487 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 468 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 383 bp overlap
ChIP DE DE-FOXA2-2 333 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 196 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 239 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 165 bp overlap
GATA3 8 datasets
ChIP CCRF-CEM GSE33850.GATA3.CCRF-CEM 194 bp overlap
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 285 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 477 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 473 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 466 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 393 bp overlap
ChIP RPMI8402 GSE39179.GATA3.RPMI8402 193 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 342 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 487 bp overlap
ChIP DE DE-GATA4-2 487 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 247 bp overlap
ChIP foregut GSE117136.GATA4.foregut 284 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 440 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 368 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 147 bp overlap
ChIP DE DE-GATA6-1 487 bp overlap
ChIP DE DE-GATA6-2 472 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 443 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 339 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 356 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 487 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 487 bp overlap
ChIP foregut GSE117136.GATA6.foregut 274 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 131 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
ISL1 1 dataset
ChIP Huh-7 GSE77957.ISL1.Huh-7 269 bp overlap
KMT2A 4 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 487 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 139 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 126 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 296 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 457 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 381 bp overlap
MED1 1 dataset
ChIP Jurkat GSE59657.MED1.Jurkat 487 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 231 bp overlap
ChIP K562 ENCFF320GSD 299 bp overlap
MITF 1 dataset
ChIP 501-mel GSE137522.MITF.501-mel 301 bp overlap
MXI1 1 dataset
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
MYB 6 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 168 bp overlap
ChIP DU528 GSE94000.MYB.DU528 487 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 487 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 487 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 487 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 487 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 487 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NOTCH1 3 datasets
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 418 bp overlap
ChIP HPBALL GSE39263.NOTCH1.HPBALL 487 bp overlap
ChIP THP-6_shCtrl GSE138516.NOTCH1.THP-6_shCtrl 306 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
NR5A1 1 dataset
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 153 bp overlap
RBPJ 3 datasets
ChIP CUTLL1 GSE29600.RBPJ.CUTLL1 359 bp overlap
ChIP THP-6_shCtrl GSE138516.RBPJ.THP-6_shCtrl 375 bp overlap
ChIP THP-6_shEts1 GSE138516.RBPJ.THP-6_shEts1 331 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RUNX1 5 datasets
ChIP ALL-SIL GSE102209.RUNX1.ALL-SIL 118 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 487 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 396 bp overlap
ChIP Jurkat GSE29180.RUNX1.Jurkat 176 bp overlap
ChIP Jurkat GSE42575.RUNX1.Jurkat 171 bp overlap
RUNX1-3 1 dataset
ChIP Jurkat GSE17954.RUNX1-3.Jurkat 259 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 375 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 376 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 386 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 487 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 487 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 487 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 487 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 487 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 487 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 456 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 238 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 319 bp overlap
SPI1 6 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 245 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 472 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 478 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 487 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 453 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 152 bp overlap
SUPT5H 2 datasets
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 260 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 487 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 255 bp overlap
TAL1 10 datasets
ChIP CCRF-CEM GSE33850.TAL1.CCRF-CEM 472 bp overlap
ChIP Jurkat GSE29180.TAL1.Jurkat 340 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 201 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 160 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 203 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 236 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 487 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 263 bp overlap
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 272 bp overlap
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 384 bp overlap
TAL1_SCL 1 dataset
ChIP erythroid GSE25000.TAL1_SCL.erythroid 441 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 312 bp overlap
TCF12 3 datasets
ChIP Jurkat GSE29180.TCF12.Jurkat 454 bp overlap
ChIP K-562 ENCSR744WOO.TCF12.K-562 202 bp overlap
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 401 bp overlap
TCF3 1 dataset
ChIP RPMI8402 GSE39179.TCF3.RPMI8402 242 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 357 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 135 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZMIZ1 2 datasets
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 451 bp overlap
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 430 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 171 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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