chr15 : 51,069,431 – 51,069,998
567 bp 105 TFs 3 linked genes
This 567 bp open chromatin element is linked to ENSG00000259204, AP4E1, and ENSG00000273674 and is bound by 105 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000259204 at TSS At TSS Proximity
AP4E1 160.9 kb Distal Multiome
ENSG00000273674 161.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:51,064,431 – 51,074,998
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 84 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 152 bp overlap
Alx1 1 dataset
Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap
Arid3b 1 dataset
Motif DE_36h DE_36h-Arid3b_MA0601.2 7 bp overlap
Arx 1 dataset
Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BARX2 1 dataset
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
BCL6 1 dataset
Motif DE_36h DE_36h-BCL6_MA0463.3 13 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 330 bp overlap
BRD4 1 dataset
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 376 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 348 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 108 bp overlap
CTCF 1 dataset
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DMRTA2 2 datasets
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 270 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 363 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF039QRE 67 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 135 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 166 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 403 bp overlap
ChIP DE DE-FOXA2-2 387 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 284 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 251 bp overlap
GATA1::TAL1 2 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 3 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 194 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 193 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 197 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 286 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 543 bp overlap
ChIP DE DE-GATA4-2 567 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 339 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 534 bp overlap
ChIP DE DE-GATA6-2 520 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 567 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 567 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 567 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 567 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 567 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 567 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 532 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 282 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 418 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 215 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA4 1 dataset
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB4 4 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC10 1 dataset
Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap
HOXC4 4 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 4 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hmx2 1 dataset
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 146 bp overlap
ChIP GM12878 ENCFF753XDO 77 bp overlap
ChIP GM12878 ENCFF824TGK 435 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 286 bp overlap
ChIP GM12878 ENCFF918AID 379 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 325 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 342 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 486 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 462 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 233 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 395 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 108 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MAFF 2 datasets
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 241 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 363 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 391 bp overlap
MXI1 2 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYF6 2 datasets
Motif DE_36h DE_36h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 204 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 567 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 63 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 339 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 95 bp overlap
NKX6-1 1 dataset
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 4 datasets
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
PBX3 2 datasets
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 199 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 230 bp overlap
PKNOX1 2 datasets
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
POU1F1 2 datasets
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU4F1 1 dataset
Motif DE_36h DE_36h-POU4F1_MA0790.2 12 bp overlap
POU4F3 1 dataset
Motif DE_36h DE_36h-POU4F3_MA0791.2 12 bp overlap
POU6F1 4 datasets
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
POU6F2 3 datasets
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 245 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 123 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 314 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 202 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 417 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 270 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 377 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 424 bp overlap
Rhox11 3 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCFF171OVM 109 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 558 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 567 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 567 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 446 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 567 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 389 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 486 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 217 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 530 bp overlap
SOX18 1 dataset
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 220 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 292 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 567 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 140 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 567 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 514 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 165 bp overlap
ZNF211 1 dataset
Motif DE_36h DE_36h-ZNF211_MA1974.2 10 bp overlap
ZNF684 1 dataset
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
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