chr15 : 42,577,547 – 42,577,881
334 bp 73 TFs 2 linked genes
This 334 bp open chromatin element is linked to STARD9 and ENSG00000261822 and is bound by 73 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
STARD9 1.9 kb Proximal Proximity
ENSG00000261822 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:42,572,547 – 42,582,881
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 217 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 124 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 235 bp overlap
BHLHE22 1 dataset
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 120 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 142 bp overlap
BRD2 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 264 bp overlap
BRD4 3 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 228 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 232 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 293 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 334 bp overlap
ChIP K562 ENCFF673OEZ 334 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 91 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 332 bp overlap
ChIP K562 ENCFF403WPG 334 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 194 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 77 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 334 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 151 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 161 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 286 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 334 bp overlap
ChIP DE DE-FOXA2-1 334 bp overlap
ChIP DE DE-FOXA2-2 334 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 142 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 265 bp overlap
GATA1 3 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 79 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 207 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
GATA2 4 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 174 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 324 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 334 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 245 bp overlap
GATA3 2 datasets
ChIP SK-N-SH ENCFF040SSB 68 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 198 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 119 bp overlap
ChIP DE DE-GATA4-1 334 bp overlap
ChIP DE DE-GATA4-2 334 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 197 bp overlap
ChIP foregut GSE117136.GATA4.foregut 334 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 334 bp overlap
ChIP DE DE-GATA6-2 334 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 334 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 334 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 334 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 334 bp overlap
ChIP foregut GSE117136.GATA6.foregut 334 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 301 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 334 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 334 bp overlap
GPS2 1 dataset
ChIP hMADS_D0_E GSE152517.GPS2.hMADS_D0_E 73 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 264 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 229 bp overlap
JUN 1 dataset
ChIP DE_D2 S54-DE-d2-JUN-exp2 292 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 233 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 233 bp overlap
ChIP K562 ENCFF128TYE 334 bp overlap
KMT2A 2 datasets
ChIP THP-1 GSE79899.KMT2A.THP-1 166 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 121 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 271 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 334 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 161 bp overlap
MED1 6 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 182 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 124 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 127 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 124 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 150 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 136 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 129 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 122 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 278 bp overlap
ChIP K562 ENCFF320GSD 307 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 303 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 125 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 236 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 322 bp overlap
MYOD1 3 datasets
ChIP RH4 GSE83726.MYOD1.RH4 185 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 285 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
MYOG 2 datasets
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 167 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 334 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 334 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 297 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 305 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 122 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 189 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 103 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF070PCA 90 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 87 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 225 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 255 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 334 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 334 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 334 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 334 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 184 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 326 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 160 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 334 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 180 bp overlap
SPI1 12 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 132 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 231 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 290 bp overlap
ChIP GM12878 ENCFF134LCP 75 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 159 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 279 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 171 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 128 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 203 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 152 bp overlap
SPIB 1 dataset
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 139 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 119 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 293 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 122 bp overlap
TAL1 2 datasets
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 151 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 240 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 334 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 200 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 159 bp overlap
ChIP SK-N-SH ENCFF147AHB 134 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 186 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 324 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 334 bp overlap
TEAD4 2 datasets
ChIP K562 ENCFF673NIK 317 bp overlap
ChIP K562 ENCFF673NIK 178 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR322CFO.ZEB2.K-562 297 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 334 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 334 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 299 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 225 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 272 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 208 bp overlap
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