chr13 : 73,061,972 73,062,209
237 bp 60 TFs 1 linked gene
This 237 bp open chromatin element is linked to KLF5 and is bound by 60 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
KLF5 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:73,056,972 – 73,067,209
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 237 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 237 bp overlap
BRD4 6 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 60 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 184 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 237 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 208 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 237 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 164 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 229 bp overlap
CHD2 2 datasets
ChIP HeLa-S3 ENCFF078QRQ 55 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 182 bp overlap
CTCF 13 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 181 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 173 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 237 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 227 bp overlap
ChIP endodermal cell ENCFF471YCZ 237 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 237 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 174 bp overlap
ChIP prostate gland ENCFF979KAF 237 bp overlap
ChIP thyroid gland ENCFF631QRY 237 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 231 bp overlap
ChIP transverse colon ENCFF077CMZ 237 bp overlap
ChIP transverse colon ENCFF749DPF 237 bp overlap
CTCFL 2 datasets
ChIP FT282 GSE131931.CTCFL.FT282 166 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 197 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 193 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 237 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 188 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 173 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 71 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 84 bp overlap
FOXA1 4 datasets
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 67 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 233 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 170 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 159 bp overlap
FOXA2 1 dataset
ChIP KerCT GSE90454.FOXA2.KerCT 128 bp overlap
GATA4 2 datasets
ChIP KATO-III GSE51705.GATA4.KATO-III 237 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 237 bp overlap
GATA6 1 dataset
ChIP KATO-III GSE51705.GATA6.KATO-III 191 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 155 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 86 bp overlap
HIF1A 2 datasets
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 148 bp overlap
ChIP ccRCC GSE86092.HIF1A.ccRCC 237 bp overlap
HMGB1 1 dataset
ChIP HUVEC-C GSE98245.HMGB1.HUVEC-C 119 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 237 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 219 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 237 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 201 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 158 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 198 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POLR2A 9 datasets
ChIP HeLa-S3 ENCFF455YYQ 237 bp overlap
ChIP HeLa-S3 ENCFF773DNG 237 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 228 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 237 bp overlap
ChIP stomach ENCFF607ZPU 215 bp overlap
ChIP thyroid gland ENCFF979LRR 237 bp overlap
ChIP transverse colon ENCFF193UMS 112 bp overlap
ChIP transverse colon ENCFF607LKE 96 bp overlap
ChIP transverse colon ENCFF610RWV 237 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 86 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 54 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 237 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 174 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 219 bp overlap
RELA 4 datasets
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 108 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 237 bp overlap
ChIP HDF_DMSO GSE77225.RELA.HDF_DMSO 237 bp overlap
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 98 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 150 bp overlap
RNF2 1 dataset
ChIP WA01 ENCSR784VUY.RNF2.WA01 237 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 237 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 237 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 237 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 136 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 77 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 144 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 134 bp overlap
SREBF1 1 dataset
ChIP TE-5 GSE143803.SREBF1.TE-5 237 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 172 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 135 bp overlap
STAT1 1 dataset
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 57 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 164 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 111 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 237 bp overlap
SUZ12 1 dataset
ChIP H1 ENCFF881NFR 237 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 107 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 119 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 116 bp overlap
TP63 11 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 200 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 123 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 180 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 195 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 237 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 143 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 178 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 237 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 234 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 237 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 237 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 237 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 142 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 237 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap