chr13 : 63,449,546 – 63,450,015

469 bp 97 TFs 0 linked genes

This 469 bp open chromatin element has no linked target genes and is bound by 97 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

97 transcription factors

AFF4 1 dataset

ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 149 bp overlap

ARID1A 1 dataset

ChIP 12Z GSE129781.ARID1A.12Z 177 bp overlap

Atoh1 1 dataset

Motif DE_60h DE_60h-Atoh1_MA1467.3 7 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BRCA1 3 datasets

ChIP K-562 ENCSR223MLH.BRCA1.K-562 469 bp overlap

ChIP K562 ENCFF872NBT 149 bp overlap

ChIP K562 ENCFF872NBT 79 bp overlap

BRD4 1 dataset

ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 368 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

CEBPG 1 dataset

Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap

CHD7 2 datasets

ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 220 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 369 bp overlap

CTBP1 2 datasets

ChIP HEK293T ENCFF003PDY 331 bp overlap

ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 425 bp overlap

CTCF 4 datasets

ChIP HeLa GSE126990.CTCF.HeLa 187 bp overlap

ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 187 bp overlap

ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 159 bp overlap

ChIP islet ERP004003.CTCF.islet 222 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 263 bp overlap

DAXX 1 dataset

ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 248 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

DMRTA2 1 dataset

Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap

Dlx2 1 dataset

Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap

ELL2 1 dataset

ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 224 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 285 bp overlap

ChIP A-673_D14 GSE129155.FLI1.A-673_D14 224 bp overlap

FOS 1 dataset

ChIP myometrium_PT1063 GSE128230.FOS.myometrium_PT1063 57 bp overlap

FOSL1 1 dataset

ChIP BT-549 GSE46166.FOSL1.BT-549 349 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 374 bp overlap

ChIP DE DE-FOXA2-2 403 bp overlap

GATA2 2 datasets

ChIP ESF GSE108408.GATA2.ESF 376 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 186 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 370 bp overlap

ChIP DE DE-GATA4-2 360 bp overlap

ChIP Hep-G2 GSE135714.GATA4.Hep-G2 403 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 443 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 350 bp overlap

ChIP DE DE-GATA6-2 379 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 364 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 403 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 381 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 355 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 381 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 384 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 233 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

HAND2 1 dataset

Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HMBOX1 1 dataset

Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

ISL1 1 dataset

ChIP SK-N-SH ENCFF285GEQ 454 bp overlap

JUN 1 dataset

ChIP BT-549 GSE46166.JUN.BT-549 179 bp overlap

KLF5 1 dataset

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 221 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

MAX 1 dataset

ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 195 bp overlap

MEIS1 1 dataset

ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 199 bp overlap

MGA::EVX1 1 dataset

Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap

MSANTD3 1 dataset

Motif DE_60h DE_60h-MSANTD3_MA1523.2 7 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 240 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NELFE 2 datasets

ChIP HeLa GSE125534.NELFE.HeLa 379 bp overlap

ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 151 bp overlap

NEUROD1 3 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 152 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap

Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_60h DE_60h-NEUROG2_MA1642.2 7 bp overlap

NFIL3 1 dataset

Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap

NKX2-2 1 dataset

Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap

NR2F2 1 dataset

ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 180 bp overlap

NR3C1 1 dataset

ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 94 bp overlap

NUP98-HOXA9 1 dataset

ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 231 bp overlap

Neurod2 1 dataset

Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 311 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

PKNOX1 2 datasets

ChIP HEK293T ENCFF174WDB 393 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 457 bp overlap

PPARG 1 dataset

Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

PSIP1 2 datasets

ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 60 bp overlap

ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 156 bp overlap

Pparg::Rxra 1 dataset

Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap

Ptf1A 1 dataset

Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap

RAD21 1 dataset

ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 281 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 386 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 455 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

RREB1 1 dataset

Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap

Rfx6 1 dataset

Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap

SIX2 3 datasets

ChIP HEK GSE73865.SIX2.HEK 409 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 433 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 349 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 239 bp overlap

SMARCA2 1 dataset

ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 225 bp overlap

SMARCA4 5 datasets

ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 118 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 424 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 209 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 419 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 423 bp overlap

SMARCC1 1 dataset

ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 231 bp overlap

SMC3 2 datasets

ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 152 bp overlap

ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 345 bp overlap

SOX18 1 dataset

Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 469 bp overlap

ChIP NPC GSE122631.SOX2.NPC 235 bp overlap

SP5_Hydra 2 datasets

ChIP HEK293_Hydra_dDBD GSE121316.SP5_Hydra.HEK293_Hydra_dDBD 218 bp overlap

ChIP HEK293_dDBD GSE110277.SP5_Hydra.HEK293_dDBD 280 bp overlap

SP5_Zebrafish 2 datasets

ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 469 bp overlap

ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 420 bp overlap

SREBF2 1 dataset

Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap

STAG1 2 datasets

ChIP HeLa GSE126990.STAG1.HeLa 469 bp overlap

ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 469 bp overlap

STAT3 1 dataset

ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 426 bp overlap

STAT5A 1 dataset

ChIP MV4-11 GSE64862.STAT5A.MV4-11 126 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap

TCF7L2 2 datasets

ChIP HEK293 ENCFF513JQN 460 bp overlap

ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 358 bp overlap

TEAD4 1 dataset

ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 281 bp overlap

TWIST1 2 datasets

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 234 bp overlap

ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 234 bp overlap

Tfcp2l1 1 dataset

Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap

VENTX 1 dataset

Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap

YY1 2 datasets

ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 299 bp overlap

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 332 bp overlap

YY1AP1 1 dataset

ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 288 bp overlap

ZNF140 1 dataset

Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap

ZNF384 2 datasets

ChIP HEK293T ENCFF019DZX 320 bp overlap

ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 286 bp overlap

ZNF479 1 dataset

ChIP HEK293T GSE78099.ZNF479.HEK293T 82 bp overlap

ZNF707 1 dataset

Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap

ZSCAN29 1 dataset

Motif DE_60h DE_60h-ZSCAN29_MA1602.2 11 bp overlap