chr13 : 61,202,099 – 61,202,401
302 bp 97 TFs 0 linked genes
This 302 bp open chromatin element has no linked target genes and is bound by 97 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:61,197,099 – 61,207,401
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 241 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 126 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 135 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Bhlha15 1 dataset
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 224 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 260 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 224 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 112 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 292 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 175 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 141 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 183 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 292 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 172 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 139 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 188 bp overlap
ChIP DE DE-GATA4-2 280 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 302 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 266 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 272 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 293 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 140 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 139 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 239 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 302 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 280 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 302 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 302 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 182 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 183 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NANOG 9 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 302 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 302 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 215 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 302 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 302 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 274 bp overlap
ChIP hESC GSE20650.NANOG.hESC 275 bp overlap
ChIP hESC GSE18292.NANOG.hESC 176 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 220 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 243 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 241 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 202 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 167 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 232 bp overlap
ChIP H1 ENCFF833NJP 297 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 300 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 211 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 302 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 200 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 205 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 302 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 302 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 159 bp overlap
RARA::RXRA 1 dataset
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 252 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 143 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 302 bp overlap
ChIP H1 ENCFF896IJG 285 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 183 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 185 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 199 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 183 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 268 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 302 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 302 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 302 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 287 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 302 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 240 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 302 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 244 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 185 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 204 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 186 bp overlap
ChIP hESC GSE69479.SOX2.hESC 198 bp overlap
ChIP hESC GSE18292.SOX2.hESC 110 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 302 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 299 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 192 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 176 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 240 bp overlap
TAL1::TCF3 2 datasets
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 205 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 302 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 299 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 266 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 221 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 147 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF274 3 datasets
ChIP H1 ENCFF434LDY 302 bp overlap
ChIP H1 ENCFF434LDY 100 bp overlap
ChIP WA01 ENCSR000EUN.ZNF274.WA01 299 bp overlap
ZNF331 4 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ChIP GM23338 ENCFF410NSZ 225 bp overlap
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 158 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 302 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 241 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 260 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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