chr13 : 45,882,568 – 45,883,152

584 bp 82 TFs 0 linked genes

This 584 bp open chromatin element has no linked target genes and is bound by 82 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

82 transcription factors

AR 1 dataset

ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 155 bp overlap

BCL11A 1 dataset

ChIP H1 ENCFF836SSR 177 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 262 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 172 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 342 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 546 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 535 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 337 bp overlap

EZH2 2 datasets

ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 101 bp overlap

ChIP neural progenitor cell ENCFF018MKA 584 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 528 bp overlap

FEZF1 1 dataset

ChIP HEK293 GSE76494.FEZF1.HEK293 239 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 398 bp overlap

ChIP DE DE-FOXA2-2 392 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 194 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXP1 2 datasets

ChIP H9 GSE31006.FOXP1.H9 201 bp overlap

ChIP H9 GSE31006.FOXP1.H9 81 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 412 bp overlap

ChIP DE DE-GATA4-2 436 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 363 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 377 bp overlap

ChIP DE DE-GATA6-2 584 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 584 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 420 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 542 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 146 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 537 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 584 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 300 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 284 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 369 bp overlap

HDAC2 1 dataset

ChIP H1 ENCFF939VKA 237 bp overlap

HOXA4 1 dataset

Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

Hnf1A 2 datasets

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 1 dataset

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 271 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 189 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 558 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 584 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 551 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 584 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 220 bp overlap

MTF1 1 dataset

Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 125 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 456 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 388 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 208 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 584 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 494 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 534 bp overlap

ChIP hESC GSE18292.NANOG.hESC 100 bp overlap

ChIP hESC GSE20650.NANOG.hESC 278 bp overlap

ChIP hESC GSE18292.NANOG.hESC 100 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 302 bp overlap

NKX6-1 1 dataset

Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap

NKX6-3 1 dataset

Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap

ONECUT3 1 dataset

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

PBX1 1 dataset

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 502 bp overlap

PDX1 1 dataset

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 268 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 146 bp overlap

POU5F1 1 dataset

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 332 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 257 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 364 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RFX5 1 dataset

Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap

Rhox11 1 dataset

Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap

SIX2 4 datasets

Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap

ChIP HEK GSE73865.SIX2.HEK 354 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 199 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 377 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 330 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 504 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 584 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 584 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 411 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 541 bp overlap

SMARCA4 5 datasets

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 249 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 584 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 460 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 404 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 419 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 539 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 418 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 160 bp overlap

SOX2 6 datasets

ChIP HNSC GSE69479.SOX2.HNSC 514 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 194 bp overlap

ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 182 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap

ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 460 bp overlap

ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 432 bp overlap

SOX21 2 datasets

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 337 bp overlap

SOX4 1 dataset

ChIP MDA-MB-231 GSE104760.SOX4.MDA-MB-231 337 bp overlap

SPI1 1 dataset

ChIP EM-3 GSE128834.SPI1.EM-3 67 bp overlap

Sox1 1 dataset

Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

Stat6 1 dataset

Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 189 bp overlap

TCF3 1 dataset

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 404 bp overlap

TCF7 1 dataset

Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 174 bp overlap

Wt1 1 dataset

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

ZIM3 1 dataset

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF281 1 dataset

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

ZNF667 1 dataset

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

ZNF675 1 dataset

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

ZNF677 1 dataset

Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap