chr12 : 109,679,688 109,680,306
618 bp 69 TFs 8 linked genes
This 618 bp open chromatin element is linked to 8 target genes and is bound by 69 transcription factors.
Linked Genes
8 genes
Gene Expression Dist. to TSS Distance Link type
FAM222A 33.7 kb Distal Multiome
MVK 106.3 kb Distal Multiome
MMAB 106.5 kb Distal Multiome
TRPV4 153.3 kb Distal Multiome
GLTP 200.4 kb Distal Multiome
UBE3B 202.5 kb Distal Multiome
KCTD10 202.8 kb Distal Multiome
TCHP 220.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:109,674,688 – 109,685,306
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 235 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 186 bp overlap
ASCL1 5 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 171 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 266 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 193 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 322 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 368 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 309 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 205 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 199 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 270 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 360 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 197 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 277 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 227 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 315 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 269 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 402 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 311 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 473 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 444 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 123 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 201 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 185 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 334 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 284 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 270 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 259 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 391 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 586 bp overlap
ChIP DE DE-GATA4-2 504 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 538 bp overlap
ChIP DE DE-GATA6-2 544 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 527 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 618 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 473 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 541 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 538 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 433 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 399 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 577 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 484 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 274 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 413 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 316 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 219 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 433 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 120 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 322 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 218 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 391 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 416 bp overlap
MED1 3 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 189 bp overlap
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 403 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 299 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 363 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 392 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 426 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 294 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 453 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 364 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 292 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 129 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 328 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 324 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 496 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 363 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 219 bp overlap
ChIP islet ERP001456.PDX1.islet 307 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 283 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 289 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 410 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 359 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 474 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 267 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 202 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 185 bp overlap
RBPJ 1 dataset
ChIP HCC1599 GSE116871.RBPJ.HCC1599 246 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 487 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 268 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 238 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 297 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 531 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 543 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 52 bp overlap
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 290 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 373 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 526 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 466 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 598 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 452 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 294 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 384 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 100 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 93 bp overlap
STAT3 1 dataset
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 152 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 187 bp overlap
TAL1 4 datasets
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 155 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 146 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 175 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP K-562 ENCSR744WOO.TCF12.K-562 211 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 511 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 555 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 192 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 235 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 344 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 342 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCFF906MQV 104 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap