chr12 : 88,570,250 – 88,570,474
224 bp 61 TFs 1 linked gene
This 224 bp open chromatin element is linked to KITLG and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KITLG 10.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:88,565,250 – 88,575,474
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 224 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 224 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 224 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 178 bp overlap
ChIP primary-dermal-fibroblasts_overexpressed GSE81403.ATF3.primary-dermal-fibroblasts_overexpressed 175 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCFF312JYK 224 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 219 bp overlap
BRD4 1 dataset
ChIP HCC1395 GSE63581.BRD4.HCC1395 224 bp overlap
CDK8 2 datasets
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 181 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 58 bp overlap
CDK9 1 dataset
ChIP HCT-116_KAP1-KO GSE132705.CDK9.HCT-116_KAP1-KO 168 bp overlap
CEBPB 1 dataset
ChIP IMR-90 ENCFF468UGY 73 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 190 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 190 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 224 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 224 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 224 bp overlap
FOS 5 datasets
ChIP IMR-90 ENCFF179EDA 183 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 178 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 108 bp overlap
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 57 bp overlap
ChIP myometrium_PT916 GSE128230.FOS.myometrium_PT916 89 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 182 bp overlap
FOSL2 3 datasets
ChIP LPS141 GSE111253.FOSL2.LPS141 165 bp overlap
ChIP SK-N-SH ENCFF127ZDW 182 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 129 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 224 bp overlap
GATA3 2 datasets
ChIP SK-N-SH ENCFF040SSB 135 bp overlap
ChIP SK-N-SH ENCFF040SSB 224 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 144 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 179 bp overlap
JUND 2 datasets
ChIP SK-N-SH ENCFF551NEQ 175 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 108 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 113 bp overlap
MED1 3 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 224 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 161 bp overlap
ChIP myoblast GSE60026.MED1.myoblast 153 bp overlap
MED12 4 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 119 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 150 bp overlap
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 126 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 174 bp overlap
MEN1 2 datasets
ChIP HCT-116_B1 GSE152144.MEN1.HCT-116_B1 53 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 201 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 145 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 107 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 165 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 167 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 205 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 222 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 224 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 221 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 209 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 82 bp overlap
POLR2A 2 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 224 bp overlap
ChIP stomach ENCFF820WZN 173 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 198 bp overlap
RELA 12 datasets
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 187 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 224 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 149 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 188 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 188 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 224 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 164 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 112 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 131 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 155 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 126 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 65 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 107 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 131 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 70 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 101 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 183 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 131 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 121 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 3 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 146 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 208 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 222 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 139 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 224 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 224 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 145 bp overlap
WDR5 1 dataset
ChIP RS4-11 GSE72864.WDR5.RS4-11 50 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 4 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 220 bp overlap
ChIP SK-N-SH ENCFF087JSD 224 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 117 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 146 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Zbtb2 1 dataset
Motif DE_12h DE_12h-Zbtb2_MA2340.1 10 bp overlap
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